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Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.
Belashov IA, Crawford DW, Cavender CE, Dai P, Beardslee PC, Mathews DH, Pentelute BL, McNaughton BR, Wedekind JE. Belashov IA, et al. Among authors: mathews dh. Nucleic Acids Res. 2018 Jul 27;46(13):6401-6415. doi: 10.1093/nar/gky529. Nucleic Acids Res. 2018. PMID: 29961805 Free PMC article.
RNA secondary structure prediction.
Mathews DH, Turner DH, Zuker M. Mathews DH, et al. Curr Protoc Nucleic Acid Chem. 2007 Mar;Chapter 11:Unit 11.2. doi: 10.1002/0471142700.nc1102s28. Curr Protoc Nucleic Acid Chem. 2007. PMID: 18428968 Free PMC article.
Stochastic sampling of the RNA structural alignment space.
Harmanci AO, Sharma G, Mathews DH. Harmanci AO, et al. Among authors: mathews dh. Nucleic Acids Res. 2009 Jul;37(12):4063-75. doi: 10.1093/nar/gkp276. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429694 Free PMC article.
RNA structure prediction: an overview of methods.
Seetin MG, Mathews DH. Seetin MG, et al. Among authors: mathews dh. Methods Mol Biol. 2012;905:99-122. doi: 10.1007/978-1-61779-949-5_8. Methods Mol Biol. 2012. PMID: 22736001 Review.
160 results