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The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE.
Clack T, Mathews S, Sharrock RA. Clack T, et al. Among authors: mathews s. Plant Mol Biol. 1994 Jun;25(3):413-27. doi: 10.1007/BF00043870. Plant Mol Biol. 1994. PMID: 8049367
Duplicate genes and the root of angiosperms, with an example using phytochrome sequences.
Donoghue MJ, Mathews S. Donoghue MJ, et al. Among authors: mathews s. Mol Phylogenet Evol. 1998 Jun;9(3):489-500. doi: 10.1006/mpev.1998.0511. Mol Phylogenet Evol. 1998. PMID: 9667997
The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms.
Mathews S, Sharrock RA. Mathews S, et al. Mol Biol Evol. 1996 Oct;13(8):1141-50. doi: 10.1093/oxfordjournals.molbev.a025677. Mol Biol Evol. 1996. PMID: 8865668
Evolutionary aspects of plant photoreceptors.
Li FW, Mathews S. Li FW, et al. Among authors: mathews s. J Plant Res. 2016 Mar;129(2):115-22. doi: 10.1007/s10265-016-0785-4. Epub 2016 Feb 3. J Plant Res. 2016. PMID: 26843269 Review.
Evolutionary studies illuminate the structural-functional model of plant phytochromes.
Mathews S. Mathews S. Plant Cell. 2010 Jan;22(1):4-16. doi: 10.1105/tpc.109.072280. Epub 2010 Jan 29. Plant Cell. 2010. PMID: 20118225 Free PMC article. Review.
Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms.
Mathews S, Burleigh JG, Donoghue MJ. Mathews S, et al. Mol Biol Evol. 2003 Jul;20(7):1087-97. doi: 10.1093/molbev/msg123. Epub 2003 May 30. Mol Biol Evol. 2003. PMID: 12777523
Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments.
Mathews S. Mathews S. Mol Ecol. 2006 Oct;15(12):3483-503. doi: 10.1111/j.1365-294X.2006.03051.x. Mol Ecol. 2006. PMID: 17032252 Review.
Phylogenetic relationships of B-related phytochromes in the Brassicaceae: Redundancy and the persistence of phytochrome D.
Mathews S, McBreen K. Mathews S, et al. Mol Phylogenet Evol. 2008 Nov;49(2):411-23. doi: 10.1016/j.ympev.2008.07.026. Epub 2008 Aug 19. Mol Phylogenet Evol. 2008. PMID: 18768161
The origin and evolution of phototropins.
Li FW, Rothfels CJ, Melkonian M, Villarreal JC, Stevenson DW, Graham SW, Wong GK, Mathews S, Pryer KM. Li FW, et al. Among authors: mathews s. Front Plant Sci. 2015 Aug 12;6:637. doi: 10.3389/fpls.2015.00637. eCollection 2015. Front Plant Sci. 2015. PMID: 26322073 Free PMC article.
Primers for Castilleja and their utility across Orobanchaceae: I. Chloroplast primers.
Latvis M, Mortimer SME, Morales-Briones DF, Torpey S, Uribe-Convers S, Jacobs SJ, Mathews S, Tank DC. Latvis M, et al. Among authors: mathews s. Appl Plant Sci. 2017 Sep 29;5(9):apps.1700020. doi: 10.3732/apps.1700020. eCollection 2017 Sep. Appl Plant Sci. 2017. PMID: 28989821 Free PMC article.
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