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Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Matsen FA 4th, Suchard MA. Gangavarapu K, et al. Among authors: matsen fa 4th. Bioinformatics. 2024 Feb 1;40(2):btae030. doi: 10.1093/bioinformatics/btae030. Bioinformatics. 2024. PMID: 38243701 Free PMC article.
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin.
Welsh FC, Eguia RT, Lee JM, Haddox HK, Galloway J, Chau NVV, Loes AN, Huddleston J, Yu TC, Le MQ, Nhat NTD, Thanh NTL, Greninger AL, Chu HY, Englund JA, Bedford T, Matsen FA 4th, Boni MF, Bloom JD. Welsh FC, et al. Among authors: matsen fa 4th. bioRxiv [Preprint]. 2023 Dec 12:2023.12.12.571235. doi: 10.1101/2023.12.12.571235. bioRxiv. 2023. PMID: 38168237 Free PMC article. Preprint.
Using viral sequence diversity to estimate time of HIV infection in infants.
Russell ML, Fish CS, Drescher S, Cassidy NAJ, Chanana P, Benki-Nugent S, Slyker J, Mbori-Ngacha D, Bosire R, Richardson B, Wamalwa D, Maleche-Obimbo E, Overbaugh J, John-Stewart G, Matsen FA 4th, Lehman DA. Russell ML, et al. Among authors: matsen fa 4th. PLoS Pathog. 2023 Dec 20;19(12):e1011861. doi: 10.1371/journal.ppat.1011861. eCollection 2023 Dec. PLoS Pathog. 2023. PMID: 38117834 Free PMC article.
Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers.
Stoddard CI, Sung K, Yaffe ZA, Weight H, Beaudoin-Bussières G, Galloway J, Gantt S, Adhiambo J, Begnel ER, Ojee E, Slyker J, Wamalwa D, Kinuthia J, Finzi A, Matsen FA 4th, Lehman DA, Overbaugh J. Stoddard CI, et al. Among authors: matsen fa 4th. Nat Commun. 2023 Aug 11;14(1):4864. doi: 10.1038/s41467-023-40554-w. Nat Commun. 2023. PMID: 37567924 Free PMC article.
Passively Acquired Constant Region 5-Specific Antibodies Associated With Improved Survival in Infants Who Acquire Human Immunodeficiency Virus.
Yaffe ZA, Sung K, Bosire R, Farquhar C, Ngacha DM, Lohman-Payne B, Nduati R, John-Stewart G, Matsen FA 4th, Overbaugh J. Yaffe ZA, et al. Among authors: matsen fa 4th. Open Forum Infect Dis. 2023 Jun 14;10(7):ofad316. doi: 10.1093/ofid/ofad316. eCollection 2023 Jul. Open Forum Infect Dis. 2023. PMID: 37426948 Free PMC article.
Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers.
Stoddard CI, Sung K, Yaffe ZA, Weight H, Beaudoin-Bussières G, Galloway J, Gantt S, Adhiambo J, Begnel ER, Ojee E, Slyker J, Wamalwa D, Kinuthia J, Finzi A, Matsen FA 4th, Lehman DA, Overbaugh J. Stoddard CI, et al. Among authors: matsen fa 4th. bioRxiv [Preprint]. 2023 Feb 7:2023.02.06.527330. doi: 10.1101/2023.02.06.527330. bioRxiv. 2023. PMID: 36798400 Free PMC article. Updated. Preprint.
60 results