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Rice genomics: current status of genome sequencing.
Matsumoto T, Wu J, Baba T, Katayose Y, Yamamoto K, Sakata K, Yano M, Sasaki T. Matsumoto T, et al. Novartis Found Symp. 2001;236:28-38; discussion 38-41. doi: 10.1002/9780470515778.ch4. Novartis Found Symp. 2001. PMID: 11387985 Review.
RiceGAAS: an automated annotation system and database for rice genome sequence.
Sakata K, Nagamura Y, Numa H, Antonio BA, Nagasaki H, Idonuma A, Watanabe W, Shimizu Y, Horiuchi I, Matsumoto T, Sasaki T, Higo K. Sakata K, et al. Among authors: matsumoto t. Nucleic Acids Res. 2002 Jan 1;30(1):98-102. doi: 10.1093/nar/30.1.98. Nucleic Acids Res. 2002. PMID: 11752265 Free PMC article.
A comprehensive rice transcript map containing 6591 expressed sequence tag sites.
Wu J, Maehara T, Shimokawa T, Yamamoto S, Harada C, Takazaki Y, Ono N, Mukai Y, Koike K, Yazaki J, Fujii F, Shomura A, Ando T, Kono I, Waki K, Yamamoto K, Yano M, Matsumoto T, Sasaki T. Wu J, et al. Among authors: matsumoto t. Plant Cell. 2002 Mar;14(3):525-35. doi: 10.1105/tpc.010274. Plant Cell. 2002. PMID: 11910001 Free PMC article.
The genome sequence and structure of rice chromosome 1.
Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, Antonio BA, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, Chiden Y, Hayashi M, Okamoto M, Ando T, Aoki H, Arita K, Hamada M, Harada C, Hijishita S, Honda M, Ichikawa Y, Idonuma A, Iijima M, Ikeda M, Ikeno M, Ito S, Ito T, Ito Y, Ito Y, Iwabuchi A, Kamiya K, Karasawa W, Katagiri S, Kikuta A, Kobayashi N, Kono I, Machita K, Maehara T, Mizuno H, Mizubayashi T, Mukai Y, Nagasaki H, Nakashima M, Nakama Y, Nakamichi Y, Nakamura M, Namiki N, Negishi M, Ohta I, Ono N, Saji S, Sakai K, Shibata M, Shimokawa T, Shomura A, Song J, Takazaki Y, Terasawa K, Tsuji K, Waki K, Yamagata H, Yamane H, Yoshiki S, Yoshihara R, Yukawa K, Zhong H, Iwama H, Endo T, Ito H, Hahn JH, Kim HI, Eun MY, Yano M, Jiang J, Gojobori T. Sasaki T, et al. Among authors: matsumoto t. Nature. 2002 Nov 21;420(6913):312-6. doi: 10.1038/nature01184. Nature. 2002. PMID: 12447438
Physical maps and recombination frequency of six rice chromosomes.
Wu J, Mizuno H, Hayashi-Tsugane M, Ito Y, Chiden Y, Fujisawa M, Katagiri S, Saji S, Yoshiki S, Karasawa W, Yoshihara R, Hayashi A, Kobayashi H, Ito K, Hamada M, Okamoto M, Ikeno M, Ichikawa Y, Katayose Y, Yano M, Matsumoto T, Sasaki T. Wu J, et al. Among authors: matsumoto t. Plant J. 2003 Dec;36(5):720-30. doi: 10.1046/j.1365-313x.2003.01903.x. Plant J. 2003. PMID: 14617072
Composition and structure of the centromeric region of rice chromosome 8.
Wu J, Yamagata H, Hayashi-Tsugane M, Hijishita S, Fujisawa M, Shibata M, Ito Y, Nakamura M, Sakaguchi M, Yoshihara R, Kobayashi H, Ito K, Karasawa W, Yamamoto M, Saji S, Katagiri S, Kanamori H, Namiki N, Katayose Y, Matsumoto T, Sasaki T. Wu J, et al. Among authors: matsumoto t. Plant Cell. 2004 Apr;16(4):967-76. doi: 10.1105/tpc.019273. Epub 2004 Mar 22. Plant Cell. 2004. PMID: 15037733 Free PMC article.
From mapping to sequencing, post-sequencing and beyond.
Sasaki T, Matsumoto T, Antonio BA, Nagamura Y. Sasaki T, et al. Among authors: matsumoto t. Plant Cell Physiol. 2005 Jan;46(1):3-13. doi: 10.1093/pcp/pci503. Epub 2005 Jan 19. Plant Cell Physiol. 2005. PMID: 15659433 Review.
Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.
Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA. Ammiraju JS, et al. Among authors: matsumoto t. Theor Appl Genet. 2005 Nov;111(8):1596-607. doi: 10.1007/s00122-005-0091-3. Epub 2005 Nov 10. Theor Appl Genet. 2005. PMID: 16200416
Genomic structure and gene order of swine chromosome 7q1.1-->q1.2.
Tanaka M, Suzuki K, Morozumi T, Kobayashi E, Matsumoto T, Domukai M, Eguchi-Ogawa T, Shinkai H, Awata T, Uenishi H. Tanaka M, et al. Among authors: matsumoto t. Anim Genet. 2006 Feb;37(1):10-6. doi: 10.1111/j.1365-2052.2005.01362.x. Anim Genet. 2006. PMID: 16441290
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