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1,755 results
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Connecting the dots: role of standardization and technology sharing in biological simulation.
Ghosh S, Matsuoka Y, Kitano H. Ghosh S, et al. Among authors: matsuoka y. Drug Discov Today. 2010 Dec;15(23-24):1024-31. doi: 10.1016/j.drudis.2010.10.001. Epub 2010 Oct 8. Drug Discov Today. 2010. PMID: 20934535 Review.
Modeling and simulation using CellDesigner.
Matsuoka Y, Funahashi A, Ghosh S, Kitano H. Matsuoka Y, et al. Methods Mol Biol. 2014;1164:121-45. doi: 10.1007/978-1-4939-0805-9_11. Methods Mol Biol. 2014. PMID: 24927840
Software for systems biology: from tools to integrated platforms.
Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Ghosh S, et al. Among authors: matsuoka y. Nat Rev Genet. 2011 Nov 3;12(12):821-32. doi: 10.1038/nrg3096. Nat Rev Genet. 2011. PMID: 22048662 Review.
Consistent design schematics for biological systems: standardization of representation in biological engineering.
Matsuoka Y, Ghosh S, Kitano H. Matsuoka Y, et al. J R Soc Interface. 2009 Aug 6;6 Suppl 4(Suppl 4):S393-404. doi: 10.1098/rsif.2009.0046.focus. Epub 2009 Jun 3. J R Soc Interface. 2009. PMID: 19493898 Free PMC article. Review.
Using process diagrams for the graphical representation of biological networks.
Kitano H, Funahashi A, Matsuoka Y, Oda K. Kitano H, et al. Among authors: matsuoka y. Nat Biotechnol. 2005 Aug;23(8):961-6. doi: 10.1038/nbt1111. Nat Biotechnol. 2005. PMID: 16082367
Payao: a community platform for SBML pathway model curation.
Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Matsuoka Y, et al. Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5. Bioinformatics. 2010. PMID: 20371497 Free PMC article.
A comprehensive pathway map of epidermal growth factor receptor signaling.
Oda K, Matsuoka Y, Funahashi A, Kitano H. Oda K, et al. Among authors: matsuoka y. Mol Syst Biol. 2005;1:2005.0010. doi: 10.1038/msb4100014. Epub 2005 May 25. Mol Syst Biol. 2005. PMID: 16729045 Free PMC article.
PathText: a text mining integrator for biological pathway visualizations.
Kemper B, Matsuzaki T, Matsuoka Y, Tsuruoka Y, Kitano H, Ananiadou S, Tsujii J. Kemper B, et al. Among authors: matsuoka y. Bioinformatics. 2010 Jun 15;26(12):i374-81. doi: 10.1093/bioinformatics/btq221. Bioinformatics. 2010. PMID: 20529930 Free PMC article.
systemsDock: a web server for network pharmacology-based prediction and analysis.
Hsin KY, Matsuoka Y, Asai Y, Kamiyoshi K, Watanabe T, Kawaoka Y, Kitano H. Hsin KY, et al. Among authors: matsuoka y. Nucleic Acids Res. 2016 Jul 8;44(W1):W507-13. doi: 10.1093/nar/gkw335. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131384 Free PMC article.
Integration of CellDesigner and SABIO-RK.
Funahashi A, Jouraku A, Matsuoka Y, Kitano H. Funahashi A, et al. Among authors: matsuoka y. In Silico Biol. 2007;7(2 Suppl):S81-90. In Silico Biol. 2007. PMID: 17822394
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