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Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.
Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK. Azam S, et al. Among authors: may gd. Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1. Am J Bot. 2012. PMID: 22301893 Free article.
A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms.
Kudapa H, Bharti AK, Cannon SB, Farmer AD, Mulaosmanovic B, Kramer R, Bohra A, Weeks NT, Crow JA, Tuteja R, Shah T, Dutta S, Gupta DK, Singh A, Gaikwad K, Sharma TR, May GD, Singh NK, Varshney RK. Kudapa H, et al. Among authors: may gd. Mol Plant. 2012 Sep;5(5):1020-8. doi: 10.1093/mp/ssr111. Epub 2012 Jan 11. Mol Plant. 2012. PMID: 22241453 Free PMC article.
Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes.
Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, Cook DR, Varshney RK. Saxena RK, et al. Among authors: may gd. DNA Res. 2012 Dec;19(6):449-61. doi: 10.1093/dnares/dss025. Epub 2012 Oct 26. DNA Res. 2012. PMID: 23103470 Free PMC article.
Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.).
Gujaria N, Kumar A, Dauthal P, Dubey A, Hiremath P, Bhanu Prakash A, Farmer A, Bhide M, Shah T, Gaur PM, Upadhyaya HD, Bhatia S, Cook DR, May GD, Varshney RK. Gujaria N, et al. Among authors: may gd. Theor Appl Genet. 2011 May;122(8):1577-89. doi: 10.1007/s00122-011-1556-1. Epub 2011 Mar 8. Theor Appl Genet. 2011. PMID: 21384113 Free PMC article.
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers.
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA. Varshney RK, et al. Among authors: may gd. Nat Biotechnol. 2011 Nov 6;30(1):83-9. doi: 10.1038/nbt.2022. Nat Biotechnol. 2011. PMID: 22057054
Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).
Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK. Dubey A, et al. Among authors: may gd. DNA Res. 2011 Jun;18(3):153-64. doi: 10.1093/dnares/dsr007. Epub 2011 May 12. DNA Res. 2011. PMID: 21565938 Free PMC article.
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.
Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, Lohse M, Xiao Y, Town CD, Cook DR, May GD, Varshney RK. Hiremath PJ, et al. Among authors: may gd. Plant Biotechnol J. 2011 Oct;9(8):922-31. doi: 10.1111/j.1467-7652.2011.00625.x. Epub 2011 May 25. Plant Biotechnol J. 2011. PMID: 21615673 Free PMC article.
96 results