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Antimicrobial resistance surveillance in the genomic age.
McArthur AG, Tsang KK. McArthur AG, et al. Ann N Y Acad Sci. 2017 Jan;1388(1):78-91. doi: 10.1111/nyas.13289. Epub 2016 Nov 22. Ann N Y Acad Sci. 2017. PMID: 27875856 Review.
Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq).
Graham CF, Glenn TC, McArthur AG, Boreham DR, Kieran T, Lance S, Manzon RG, Martino JA, Pierson T, Rogers SM, Wilson JY, Somers CM. Graham CF, et al. Mol Ecol Resour. 2015 Nov;15(6):1304-15. doi: 10.1111/1755-0998.12404. Epub 2015 Apr 1. Mol Ecol Resour. 2015. PMID: 25783180
Bioinformatics of antimicrobial resistance in the age of molecular epidemiology.
McArthur AG, Wright GD. McArthur AG, et al. Curr Opin Microbiol. 2015 Oct;27:45-50. doi: 10.1016/j.mib.2015.07.004. Epub 2015 Jul 31. Curr Opin Microbiol. 2015. PMID: 26241506 Review.
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.
Dhillon BK, Laird MR, Shay JA, Winsor GL, Lo R, Nizam F, Pereira SK, Waglechner N, McArthur AG, Langille MG, Brinkman FS. Dhillon BK, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W104-8. doi: 10.1093/nar/gkv401. Epub 2015 Apr 27. Nucleic Acids Res. 2015. PMID: 25916842 Free PMC article.
A small molecule discrimination map of the antibiotic resistance kinome.
Shakya T, Stogios PJ, Waglechner N, Evdokimova E, Ejim L, Blanchard JE, McArthur AG, Savchenko A, Wright GD. Shakya T, et al. Chem Biol. 2011 Dec 23;18(12):1591-601. doi: 10.1016/j.chembiol.2011.10.018. Chem Biol. 2011. PMID: 22195561
The comprehensive antibiotic resistance database.
McArthur AG, Waglechner N, Nizam F, Yan A, Azad MA, Baylay AJ, Bhullar K, Canova MJ, De Pascale G, Ejim L, Kalan L, King AM, Koteva K, Morar M, Mulvey MR, O'Brien JS, Pawlowski AC, Piddock LJ, Spanogiannopoulos P, Sutherland AD, Tang I, Taylor PL, Thaker M, Wang W, Yan M, Yu T, Wright GD. McArthur AG, et al. Antimicrob Agents Chemother. 2013 Jul;57(7):3348-57. doi: 10.1128/AAC.00419-13. Epub 2013 May 6. Antimicrob Agents Chemother. 2013. PMID: 23650175 Free PMC article.
A diverse intrinsic antibiotic resistome from a cave bacterium.
Pawlowski AC, Wang W, Koteva K, Barton HA, McArthur AG, Wright GD. Pawlowski AC, et al. Nat Commun. 2016 Dec 8;7:13803. doi: 10.1038/ncomms13803. Nat Commun. 2016. PMID: 27929110 Free PMC article.
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.
Jia B, Raphenya AR, Alcock B, Waglechner N, Guo P, Tsang KK, Lago BA, Dave BM, Pereira S, Sharma AN, Doshi S, Courtot M, Lo R, Williams LE, Frye JG, Elsayegh T, Sardar D, Westman EL, Pawlowski AC, Johnson TA, Brinkman FS, Wright GD, McArthur AG. Jia B, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D566-D573. doi: 10.1093/nar/gkw1004. Epub 2016 Oct 26. Nucleic Acids Res. 2017. PMID: 27789705 Free PMC article.
Gene duplication and divergence produce divergent MHC genotypes without disassortative mating.
Dearborn DC, Gager AB, McArthur AG, Gilmour ME, Mandzhukova E, Mauck RA. Dearborn DC, et al. Mol Ecol. 2016 Sep;25(17):4355-67. doi: 10.1111/mec.13747. Epub 2016 Jul 29. Mol Ecol. 2016. PMID: 27376487 Free PMC article.
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.
Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, Camara M, Cantin A, Charette SJ, Dewar K, Déziel É, Grimwood K, Hancock RE, Harrison JJ, Heeb S, Jelsbak L, Jia B, Kenna DT, Kidd TJ, Klockgether J, Lam JS, Lamont IL, Lewenza S, Loman N, Malouin F, Manos J, McArthur AG, McKeown J, Milot J, Naghra H, Nguyen D, Pereira SK, Perron GG, Pirnay JP, Rainey PB, Rousseau S, Santos PM, Stephenson A, Taylor V, Turton JF, Waglechner N, Williams P, Thrane SW, Wright GD, Brinkman FS, Tucker NP, Tümmler B, Winstanley C, Levesque RC. Freschi L, et al. Front Microbiol. 2015 Sep 29;6:1036. doi: 10.3389/fmicb.2015.01036. eCollection 2015. Front Microbiol. 2015. PMID: 26483767 Free PMC article.
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