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ExplorEnz: the primary source of the IUBMB enzyme list.
McDonald AG, Boyce S, Tipton KF. McDonald AG, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D593-7. doi: 10.1093/nar/gkn582. Epub 2008 Sep 6. Nucleic Acids Res. 2009. PMID: 18776214 Free PMC article.
ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature.
McDonald AG, Boyce S, Moss GP, Dixon HB, Tipton KF. McDonald AG, et al. BMC Biochem. 2007 Jul 27;8:14. doi: 10.1186/1471-2091-8-14. BMC Biochem. 2007. PMID: 17662133 Free PMC article.
Functional group and substructure searching as a tool in metabolomics.
Kotera M, McDonald AG, Boyce S, Tipton KF. Kotera M, et al. Among authors: mcdonald ag. PLoS One. 2008 Feb 6;3(2):e1537. doi: 10.1371/journal.pone.0001537. PLoS One. 2008. PMID: 18253485 Free PMC article.
Eliciting possible reaction equations and metabolic pathways involving orphan metabolites.
Kotera M, McDonald AG, Boyce S, Tipton KF. Kotera M, et al. Among authors: mcdonald ag. J Chem Inf Model. 2008 Dec;48(12):2335-49. doi: 10.1021/ci800213g. J Chem Inf Model. 2008. PMID: 19053521
Tracing metabolic pathways from enzyme data.
McDonald AG, Tipton KF, Boyce S. McDonald AG, et al. Biochim Biophys Acta. 2009 Sep;1794(9):1364-71. doi: 10.1016/j.bbapap.2009.06.015. Epub 2009 Jun 27. Biochim Biophys Acta. 2009. PMID: 19563919
Databases and tools in glycobiology.
Artemenko NV, McDonald AG, Davey GP, Rudd PM. Artemenko NV, et al. Among authors: mcdonald ag. Methods Mol Biol. 2012;899:325-50. doi: 10.1007/978-1-61779-921-1_21. Methods Mol Biol. 2012. PMID: 22735963 Review.
Fifty-five years of enzyme classification: advances and difficulties.
McDonald AG, Tipton KF. McDonald AG, et al. FEBS J. 2014 Jan;281(2):583-92. doi: 10.1111/febs.12530. Epub 2013 Oct 17. FEBS J. 2014. PMID: 24103004 Review.
Elucidation of metabolic pathways from enzyme classification data.
McDonald AG, Tipton KF. McDonald AG, et al. Methods Mol Biol. 2014;1083:173-86. doi: 10.1007/978-1-62703-661-0_11. Methods Mol Biol. 2014. PMID: 24218216
A Knowledge-Based System for Display and Prediction of O-Glycosylation Network Behaviour in Response to Enzyme Knockouts.
McDonald AG, Tipton KF, Davey GP. McDonald AG, et al. PLoS Comput Biol. 2016 Apr 7;12(4):e1004844. doi: 10.1371/journal.pcbi.1004844. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27054587 Free PMC article.
Metabolic flux control in glycosylation.
McDonald AG, Hayes JM, Davey GP. McDonald AG, et al. Curr Opin Struct Biol. 2016 Oct;40:97-103. doi: 10.1016/ Epub 2016 Sep 14. Curr Opin Struct Biol. 2016. PMID: 27620650 Review.
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