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Modes of inference for evaluating the confidence of peptide identifications.
Fitzgibbon M, Li Q, McIntosh M. Fitzgibbon M, et al. Among authors: mcintosh m. J Proteome Res. 2008 Jan;7(1):35-9. doi: 10.1021/pr7007303. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067248 Free PMC article. Review.
Investigating neoplastic progression of ulcerative colitis with label-free comparative proteomics.
May D, Pan S, Crispin DA, Lai K, Bronner MP, Hogan J, Hockenbery DM, McIntosh M, Brentnall TA, Chen R. May D, et al. Among authors: mcintosh m. J Proteome Res. 2011 Jan 7;10(1):200-9. doi: 10.1021/pr100574p. Epub 2010 Oct 20. J Proteome Res. 2011. PMID: 20828217 Free PMC article.
Autoantibody signatures involving glycolysis and splicesome proteins precede a diagnosis of breast cancer among postmenopausal women.
Ladd JJ, Chao T, Johnson MM, Qiu J, Chin A, Israel R, Pitteri SJ, Mao J, Wu M, Amon LM, McIntosh M, Li C, Prentice R, Disis N, Hanash S. Ladd JJ, et al. Among authors: mcintosh m. Cancer Res. 2013 Mar 1;73(5):1502-13. doi: 10.1158/0008-5472.CAN-12-2560. Epub 2012 Dec 26. Cancer Res. 2013. PMID: 23269276 Free PMC article.
Concordant release of glycolysis proteins into the plasma preceding a diagnosis of ER+ breast cancer.
Amon LM, Pitteri SJ, Li CI, McIntosh M, Ladd JJ, Disis M, Porter P, Wong CH, Zhang Q, Lampe P, Prentice RL, Hanash SM. Amon LM, et al. Among authors: mcintosh m. Cancer Res. 2012 Apr 15;72(8):1935-42. doi: 10.1158/0008-5472.CAN-11-3266. Epub 2012 Feb 24. Cancer Res. 2012. PMID: 22367215 Free PMC article.
Advancing next-generation proteomics through computational research.
Bandeira N, Nesvizhskii A, McIntosh M. Bandeira N, et al. Among authors: mcintosh m. J Proteome Res. 2011 Jul 1;10(7):2895. doi: 10.1021/pr200484b. Epub 2011 May 31. J Proteome Res. 2011. PMID: 21627070 No abstract available.
Integrative analysis of N-linked human glycoproteomic data sets reveals PTPRF ectodomain as a novel plasma biomarker candidate for prostate cancer.
Whitmore TE, Peterson A, Holzman T, Eastham A, Amon L, McIntosh M, Ozinsky A, Nelson PS, Martin DB. Whitmore TE, et al. Among authors: mcintosh m. J Proteome Res. 2012 May 4;11(5):2653-65. doi: 10.1021/pr201200n. Epub 2012 Apr 19. J Proteome Res. 2012. PMID: 22494190
Quantitative analysis of acrylamide labeled serum proteins by LC-MS/MS.
Faca V, Coram M, Phanstiel D, Glukhova V, Zhang Q, Fitzgibbon M, McIntosh M, Hanash S. Faca V, et al. Among authors: mcintosh m. J Proteome Res. 2006 Aug;5(8):2009-18. doi: 10.1021/pr060102+. J Proteome Res. 2006. PMID: 16889424
Biomarker validation by targeted mass spectrometry.
McIntosh M, Fitzgibbon M. McIntosh M, et al. Nat Biotechnol. 2009 Jul;27(7):622-3. doi: 10.1038/nbt0709-622. Nat Biotechnol. 2009. PMID: 19587666 No abstract available.
Integrative proteomic analysis of serum and peritoneal fluids helps identify proteins that are up-regulated in serum of women with ovarian cancer.
Amon LM, Law W, Fitzgibbon MP, Gross JA, O'Briant K, Peterson A, Drescher C, Martin DB, McIntosh M. Amon LM, et al. Among authors: mcintosh m. PLoS One. 2010 Jun 15;5(6):e11137. doi: 10.1371/journal.pone.0011137. PLoS One. 2010. PMID: 20559444 Free PMC article.
Identifying Abundant Immunotherapy and Other Targets in Solid Tumors: Integrating RNA-seq and Mass Spectrometry Proteomics Data Sets.
Zhao W, Fitzgibbon M, Bergan L, Clegg N, Crispin D, Mills GB, McIntosh M. Zhao W, et al. Among authors: mcintosh m. Cancer J. 2017 Mar/Apr;23(2):108-114. doi: 10.1097/PPO.0000000000000258. Cancer J. 2017. PMID: 28410298 Free PMC article. Review.
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