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Using the Generic Synteny Browser (GBrowse_syn).
McKay SJ, Vergara IA, Stajich JE. McKay SJ, et al. Curr Protoc Bioinformatics. 2010 Sep;Chapter 9:Unit 9.12. doi: 10.1002/0471250953.bi0912s31. Curr Protoc Bioinformatics. 2010. PMID: 20836076 Free PMC article.
Cloud Computing with iPlant Atmosphere.
McKay SJ, Skidmore EJ, LaRose CJ, Mercer AW, Noutsos C. McKay SJ, et al. Curr Protoc Bioinformatics. 2013 Oct 15;43:9.15.1-9.15.20. doi: 10.1002/0471250953.bi0915s43. Curr Protoc Bioinformatics. 2013. PMID: 26270172
Gramene 2016: comparative plant genomics and pathway resources.
Tello-Ruiz MK, Stein J, Wei S, Preece J, Olson A, Naithani S, Amarasinghe V, Dharmawardhana P, Jiao Y, Mulvaney J, Kumari S, Chougule K, Elser J, Wang B, Thomason J, Bolser DM, Kerhornou A, Walts B, Fonseca NA, Huerta L, Keays M, Tang YA, Parkinson H, Fabregat A, McKay S, Weiser J, D'Eustachio P, Stein L, Petryszak R, Kersey PJ, Jaiswal P, Ware D. Tello-Ruiz MK, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D1133-40. doi: 10.1093/nar/gkv1179. Epub 2015 Nov 8. Nucleic Acids Res. 2016. PMID: 26553803 Free PMC article.
nGASP--the nematode genome annotation assessment project.
Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium; Stein LD. Coghlan A, et al. Among authors: mckay sj. BMC Bioinformatics. 2008 Dec 19;9:549. doi: 10.1186/1471-2105-9-549. BMC Bioinformatics. 2008. PMID: 19099578 Free PMC article.
Using the iPlant collaborative discovery environment.
Oliver SL, Lenards AJ, Barthelson RA, Merchant N, McKay SJ. Oliver SL, et al. Among authors: mckay sj. Curr Protoc Bioinformatics. 2013 Jun;Chapter 1:1.22.1-1.22.26. doi: 10.1002/0471250953.bi0122s42. Curr Protoc Bioinformatics. 2013. PMID: 23749752
The Reactome pathway Knowledgebase.
Fabregat A, Sidiropoulos K, Garapati P, Gillespie M, Hausmann K, Haw R, Jassal B, Jupe S, Korninger F, McKay S, Matthews L, May B, Milacic M, Rothfels K, Shamovsky V, Webber M, Weiser J, Williams M, Wu G, Stein L, Hermjakob H, D'Eustachio P. Fabregat A, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D481-7. doi: 10.1093/nar/gkv1351. Epub 2015 Dec 9. Nucleic Acids Res. 2016. PMID: 26656494 Free PMC article.
The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D. Goff SA, et al. Among authors: mckay s. Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011. Front Plant Sci. 2011. PMID: 22645531 Free PMC article.
44 results