McNair K - Search Results

1

PHACTS, a computational approach to classifying the lifestyle of phages.

McNair K, Bailey BA, Edwards RA. McNair K, et al. Bioinformatics. 2012 Mar 1;28(5):614-8. doi: 10.1093/bioinformatics/bts014. Epub 2012 Jan 11. Bioinformatics. 2012. PMID: 22238260 Free PMC article.

2

GenomePeek-an online tool for prokaryotic genome and metagenome analysis.

McNair K, Edwards RA. McNair K, et al. PeerJ. 2015 Jun 16;3:e1025. doi: 10.7717/peerj.1025. eCollection 2015. PeerJ. 2015. PMID: 26157610 Free PMC article.

3

Computational approaches to predict bacteriophage-host relationships.

Edwards RA, McNair K, Faust K, Raes J, Dutilh BE. Edwards RA, et al. Among authors: mcnair k. FEMS Microbiol Rev. 2016 Mar;40(2):258-72. doi: 10.1093/femsre/fuv048. Epub 2015 Dec 9. FEMS Microbiol Rev. 2016. PMID: 26657537 Free PMC article. Review.

4

Lytic to temperate switching of viral communities.

Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, Hester ER, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira LS, Quistad SD, Robinett NL, Sala E, Salamon P, Sanchez SE, Sandin S, Silva GG, Smith J, Sullivan C, Thompson C, Vermeij MJ, Youle M, Young C, Zgliczynski B, Brainard R, Edwards RA, Nulton J, Thompson F, Rohwer F. Knowles B, et al. Among authors: mcnair k. Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16. Nature. 2016. PMID: 26982729

5

PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.

Torres PJ, Edwards RA, McNair KA. Torres PJ, et al. Bioinformatics. 2017 Aug 1;33(15):2389-2391. doi: 10.1093/bioinformatics/btx184. Bioinformatics. 2017. PMID: 28369246 Free PMC article.

6

Phage Genome Annotation Using the RAST Pipeline.

McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R. McNair K, et al. Methods Mol Biol. 2018;1681:231-238. doi: 10.1007/978-1-4939-7343-9_17. Methods Mol Biol. 2018. PMID: 29134599

7

A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage.

Benler S, Cobián-Güemes AG, McNair K, Hung SH, Levi K, Edwards R, Rohwer F. Benler S, et al. Among authors: mcnair k. Microbiome. 2018 Oct 23;6(1):191. doi: 10.1186/s40168-018-0573-6. Microbiome. 2018. PMID: 30352623 Free PMC article.

8

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.

Ecale Zhou CL, Malfatti S, Kimbrel J, Philipson C, McNair K, Hamilton T, Edwards R, Souza B. Ecale Zhou CL, et al. Among authors: mcnair k. Bioinformatics. 2019 Nov 1;35(21):4402-4404. doi: 10.1093/bioinformatics/btz258. Bioinformatics. 2019. PMID: 31086982 Free PMC article.

9

PHANOTATE: a novel approach to gene identification in phage genomes.

McNair K, Zhou C, Dinsdale EA, Souza B, Edwards RA. McNair K, et al. Bioinformatics. 2019 Nov 1;35(22):4537-4542. doi: 10.1093/bioinformatics/btz265. Bioinformatics. 2019. PMID: 31329826 Free PMC article.

10

A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes.

Rojas MI, Cavalcanti GS, McNair K, Benler S, Alker AT, Cobián-Güemes AG, Giluso M, Levi K, Rohwer F, Bailey BA, Beyhan S, Edwards RA, Shikuma NJ. Rojas MI, et al. Among authors: mcnair k. mSystems. 2020 Jul 28;5(4):e00648-20. doi: 10.1128/mSystems.00648-20. mSystems. 2020. PMID: 32723799 Free PMC article.

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