Melo F - Search Results

1

All-atom knowledge-based potential for RNA structure prediction and assessment.

Capriotti E, Norambuena T, Marti-Renom MA, Melo F. Capriotti E, et al. Among authors: melo f. Bioinformatics. 2011 Apr 15;27(8):1086-93. doi: 10.1093/bioinformatics/btr093. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349865

2

Calculation of accurate interatomic contact surface areas for the quantitative analysis of non-bonded molecular interactions.

Ribeiro J, Ríos-Vera C, Melo F, Schüller A. Ribeiro J, et al. Among authors: melo f. Bioinformatics. 2019 Sep 15;35(18):3499-3501. doi: 10.1093/bioinformatics/btz062. Bioinformatics. 2019. PMID: 30698657 Free PMC article.

3

Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments.

Slater AW, Castellanos JI, Sippl MJ, Melo F. Slater AW, et al. Among authors: melo f. Bioinformatics. 2013 Jan 1;29(1):47-53. doi: 10.1093/bioinformatics/bts600. Epub 2012 Oct 11. Bioinformatics. 2013. PMID: 23060612

4

Structure-based characterization of multiprotein complexes.

Wiederstein M, Gruber M, Frank K, Melo F, Sippl MJ. Wiederstein M, et al. Among authors: melo f. Structure. 2014 Jul 8;22(7):1063-70. doi: 10.1016/j.str.2014.05.005. Epub 2014 Jun 19. Structure. 2014. PMID: 24954616 Free PMC article.

5

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures.

Norambuena T, Cares JF, Capriotti E, Melo F. Norambuena T, et al. Among authors: melo f. Bioinformatics. 2013 Oct 15;29(20):2649-50. doi: 10.1093/bioinformatics/btt441. Epub 2013 Aug 7. Bioinformatics. 2013. PMID: 23929030 Free PMC article.

6

Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs.

Panjkovich A, Melo F, Marti-Renom MA. Panjkovich A, et al. Among authors: melo f. Genome Biol. 2008 Apr 8;9(4):R68. doi: 10.1186/gb-2008-9-4-r68. Genome Biol. 2008. PMID: 18397517 Free PMC article.

7

A knowledge-based potential with an accurate description of local interactions improves discrimination between native and near-native protein conformations.

Ferrada E, Vergara IA, Melo F. Ferrada E, et al. Among authors: melo f. Cell Biochem Biophys. 2007;49(2):111-24. doi: 10.1007/s12013-007-0050-5. Cell Biochem Biophys. 2007. PMID: 17906366

8

Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure models.

Ferrada E, Melo F. Ferrada E, et al. Among authors: melo f. Protein Sci. 2007 Jul;16(7):1410-21. doi: 10.1110/ps.062735907. Protein Sci. 2007. PMID: 17586774 Free PMC article.

9

A tool to assist the study of specific features at protein binding sites.

Santander V, Portales MA, Melo F. Santander V, et al. Among authors: melo f. Bioinformatics. 2003;19 Suppl 1:i250-1. doi: 10.1093/bioinformatics/btg1034. Bioinformatics. 2003. PMID: 12855466

10

Comparison of different melting temperature calculation methods for short DNA sequences.

Panjkovich A, Melo F. Panjkovich A, et al. Among authors: melo f. Bioinformatics. 2005 Mar;21(6):711-22. doi: 10.1093/bioinformatics/bti066. Epub 2004 Oct 22. Bioinformatics. 2005. PMID: 15501913

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