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Using PconsC4 and PconsFold2 to Predict Protein Structure.
Bassot C, Menendez Hurtado D, Elofsson A. Bassot C, et al. Among authors: menendez hurtado d. Curr Protoc Bioinformatics. 2019 Jun;66(1):e75. doi: 10.1002/cpbi.75. Epub 2019 May 7. Curr Protoc Bioinformatics. 2019. PMID: 31063641
Methods for estimation of model accuracy in CASP12.
Elofsson A, Joo K, Keasar C, Lee J, Maghrabi AHA, Manavalan B, McGuffin LJ, Ménendez Hurtado D, Mirabello C, Pilstål R, Sidi T, Uziela K, Wallner B. Elofsson A, et al. Among authors: menendez hurtado d. Proteins. 2018 Mar;86 Suppl 1:361-373. doi: 10.1002/prot.25395. Epub 2017 Oct 17. Proteins. 2018. PMID: 28975666 Free article.
ProQ3D: improved model quality assessments using deep learning.
Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A. Uziela K, et al. Among authors: menendez hurtado d. Bioinformatics. 2017 May 15;33(10):1578-1580. doi: 10.1093/bioinformatics/btw819. Bioinformatics. 2017. PMID: 28052925
Estimation of model accuracy in CASP13.
Cheng J, Choe MH, Elofsson A, Han KS, Hou J, Maghrabi AHA, McGuffin LJ, Menéndez-Hurtado D, Olechnovič K, Schwede T, Studer G, Uziela K, Venclovas Č, Wallner B. Cheng J, et al. Among authors: menendez hurtado d. Proteins. 2019 Dec;87(12):1361-1377. doi: 10.1002/prot.25767. Epub 2019 Jul 16. Proteins. 2019. PMID: 31265154 Free PMC article.
PconsC4: fast, accurate and hassle-free contact predictions.
Michel M, Menéndez Hurtado D, Elofsson A. Michel M, et al. Among authors: menendez hurtado d. Bioinformatics. 2019 Aug 1;35(15):2677-2679. doi: 10.1093/bioinformatics/bty1036. Bioinformatics. 2019. PMID: 30590407