Menzel P - Search Results

1

RILogo: visualizing RNA-RNA interactions.

Menzel P, Seemann SE, Gorodkin J. Menzel P, et al. Bioinformatics. 2012 Oct 1;28(19):2523-6. doi: 10.1093/bioinformatics/bts461. Epub 2012 Jul 23. Bioinformatics. 2012. PMID: 22826541

2

The tedious task of finding homologous noncoding RNA genes.

Menzel P, Gorodkin J, Stadler PF. Menzel P, et al. RNA. 2009 Dec;15(12):2075-82. doi: 10.1261/rna.1556009. Epub 2009 Oct 27. RNA. 2009. PMID: 19861422 Free PMC article.

3

maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences.

Menzel P, Stadler PF, Gorodkin J. Menzel P, et al. Bioinformatics. 2011 Feb 1;27(3):317-25. doi: 10.1093/bioinformatics/btq651. Epub 2010 Dec 1. Bioinformatics. 2011. PMID: 21123221 Free PMC article.

4

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences.

Seemann SE, Menzel P, Backofen R, Gorodkin J. Seemann SE, et al. Among authors: menzel p. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W107-11. doi: 10.1093/nar/gkr248. Epub 2011 May 23. Nucleic Acids Res. 2011. PMID: 21609960 Free PMC article.

5

Fast and sensitive taxonomic classification for metagenomics with Kaiju.

Menzel P, Ng KL, Krogh A. Menzel P, et al. Nat Commun. 2016 Apr 13;7:11257. doi: 10.1038/ncomms11257. Nat Commun. 2016. PMID: 27071849 Free PMC article.

6

On the accuracy of short read mapping.

Menzel P, Frellsen J, Plass M, Rasmussen SH, Krogh A. Menzel P, et al. Methods Mol Biol. 2013;1038:39-59. doi: 10.1007/978-1-62703-514-9_3. Methods Mol Biol. 2013. PMID: 23872968

7

Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs.

Menzel P, Gudbergsdóttir SR, Rike AG, Lin L, Zhang Q, Contursi P, Moracci M, Kristjansson JK, Bolduc B, Gavrilov S, Ravin N, Mardanov A, Bonch-Osmolovskaya E, Young M, Krogh A, Peng X. Menzel P, et al. Microb Ecol. 2015 Aug;70(2):411-24. doi: 10.1007/s00248-015-0576-9. Epub 2015 Feb 25. Microb Ecol. 2015. PMID: 25712554

8

Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs.

Gudbergsdóttir SR, Menzel P, Krogh A, Young M, Peng X. Gudbergsdóttir SR, et al. Among authors: menzel p. Environ Microbiol. 2016 Mar;18(3):863-74. doi: 10.1111/1462-2920.13079. Epub 2015 Dec 21. Environ Microbiol. 2016. PMID: 26439881

9

Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju.

Tovo A, Menzel P, Krogh A, Cosentino Lagomarsino M, Suweis S. Tovo A, et al. Among authors: menzel p. Nucleic Acids Res. 2020 Sep 18;48(16):e93. doi: 10.1093/nar/gkaa568. Nucleic Acids Res. 2020. PMID: 32633756 Free PMC article.

10

Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches.

Elcheninov AG, Menzel P, Gudbergsdottir SR, Slesarev AI, Kadnikov VV, Krogh A, Bonch-Osmolovskaya EA, Peng X, Kublanov IV. Elcheninov AG, et al. Among authors: menzel p. Front Microbiol. 2017 Nov 2;8:2140. doi: 10.3389/fmicb.2017.02140. eCollection 2017. Front Microbiol. 2017. PMID: 29163426 Free PMC article.

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