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SLiM 2: Flexible, Interactive Forward Genetic Simulations.
Haller BC, Messer PW. Haller BC, et al. Among authors: messer pw. Mol Biol Evol. 2017 Jan;34(1):230-240. doi: 10.1093/molbev/msw211. Epub 2016 Oct 3. Mol Biol Evol. 2017. PMID: 27702775
A toxin-antidote CRISPR gene drive system for regional population modification.
Champer J, Lee E, Yang E, Liu C, Clark AG, Messer PW. Champer J, et al. Among authors: messer pw. Nat Commun. 2020 Feb 27;11(1):1082. doi: 10.1038/s41467-020-14960-3. Nat Commun. 2020. PMID: 32109227 Free PMC article.
Computational and experimental performance of CRISPR homing gene drive strategies with multiplexed gRNAs.
Champer SE, Oh SY, Liu C, Wen Z, Clark AG, Messer PW, Champer J. Champer SE, et al. Among authors: messer pw. Sci Adv. 2020 Mar 4;6(10):eaaz0525. doi: 10.1126/sciadv.aaz0525. eCollection 2020 Mar. Sci Adv. 2020. PMID: 32181354 Free PMC article.
The majority of recent short DNA insertions in the human genome are tandem duplications.
Messer PW, Arndt PF. Messer PW, et al. Mol Biol Evol. 2007 May;24(5):1190-7. doi: 10.1093/molbev/msm035. Epub 2007 Feb 24. Mol Biol Evol. 2007. PMID: 17322553
Effects of long-range correlations in DNA on sequence alignment score statistics.
Messer PW, Bundschuh R, Vingron M, Arndt PF. Messer PW, et al. J Comput Biol. 2007 Jun;14(5):655-68. doi: 10.1089/cmb.2007.R008. J Comput Biol. 2007. PMID: 17683266 Review.
Inferring the strength of selection in Drosophila under complex demographic models.
González J, Macpherson JM, Messer PW, Petrov DA. González J, et al. Among authors: messer pw. Mol Biol Evol. 2009 Mar;26(3):513-26. doi: 10.1093/molbev/msn270. Epub 2008 Nov 24. Mol Biol Evol. 2009. PMID: 19033258 Free PMC article.
Measuring the rates of spontaneous mutation from deep and large-scale polymorphism data.
Messer PW. Messer PW. Genetics. 2009 Aug;182(4):1219-32. doi: 10.1534/genetics.109.105692. Epub 2009 Jun 15. Genetics. 2009. PMID: 19528323 Free PMC article.
Frequent adaptation and the McDonald-Kreitman test.
Messer PW, Petrov DA. Messer PW, et al. Proc Natl Acad Sci U S A. 2013 May 21;110(21):8615-20. doi: 10.1073/pnas.1220835110. Epub 2013 May 6. Proc Natl Acad Sci U S A. 2013. PMID: 23650353 Free PMC article.
SLiM: simulating evolution with selection and linkage.
Messer PW. Messer PW. Genetics. 2013 Aug;194(4):1037-9. doi: 10.1534/genetics.113.152181. Epub 2013 May 24. Genetics. 2013. PMID: 23709637 Free PMC article.
Population genomics of rapid adaptation by soft selective sweeps.
Messer PW, Petrov DA. Messer PW, et al. Trends Ecol Evol. 2013 Nov;28(11):659-69. doi: 10.1016/j.tree.2013.08.003. Epub 2013 Sep 25. Trends Ecol Evol. 2013. PMID: 24075201 Free PMC article. Review.
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