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The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA.
Hacquard T, Clavel M, Baldrich P, Lechner E, Pérez-Salamó I, Schepetilnikov M, Derrien B, Dubois M, Hammann P, Kuhn L, Brun D, Bouteiller N, Baumberger N, Vaucheret H, Meyers BC, Genschik P. Hacquard T, et al. Among authors: meyers bc. Cell Rep. 2022 Apr 12;39(2):110671. doi: 10.1016/j.celrep.2022.110671. Cell Rep. 2022. PMID: 35417704 Free article.
RNA silencing is a conserved mechanism in eukaryotes involved in development and defense against viruses. In plants, ARGONAUTE1 (AGO1) protein plays a central role in both microRNA- and small interfering RNA-directed silencing, and its expression is regulated at multiple l …
RNA silencing is a conserved mechanism in eukaryotes involved in development and defense against viruses. In plants, ARGONAUTE1 (AGO1 …
Heat-responsive microRNAs and phased small interfering RNAs in reproductive development of flax.
Pokhrel S, Meyers BC. Pokhrel S, et al. Among authors: meyers bc. Plant Direct. 2022 Feb 15;6(2):e385. doi: 10.1002/pld3.385. eCollection 2022 Feb. Plant Direct. 2022. PMID: 35224420 Free PMC article.
Plants will face increased heat stress due to rising global temperatures. ...Plant small RNAs (sRNAs) have important regulatory roles in plant reproductive development following abiotic stress responses. ...
Plants will face increased heat stress due to rising global temperatures. ...Plant small RNAs (sRNAs) have important regulator …
The Plant Cell welcomes 2022 Assistant Features Editors.
Eckardt NA, Meyers BC. Eckardt NA, et al. Among authors: meyers bc. Plant Cell. 2022 Feb 3;34(2):703-705. doi: 10.1093/plcell/koab296. Plant Cell. 2022. PMID: 34865156 Free article. No abstract available.
Organizing your space: The potential for integrating spatial transcriptomics and 3D imaging data in plants.
Cox KL Jr, Gurazada SGR, Duncan KE, Czymmek KJ, Topp CN, Meyers BC. Cox KL Jr, et al. Among authors: meyers bc. Plant Physiol. 2022 Feb 4;188(2):703-712. doi: 10.1093/plphys/kiab508. Plant Physiol. 2022. PMID: 34726737 Free article.
Plant cells communicate information for the regulation of development and responses to external stresses. ...Linking these technologies could substantially advance transcriptomics in plant biology and other fields. Here, we review advances in ST and 3D microscopy ap …
Plant cells communicate information for the regulation of development and responses to external stresses. ...Linking these technologi …
The Streptochaeta Genome and the Evolution of the Grasses.
Seetharam AS, Yu Y, Bélanger S, Clark LG, Meyers BC, Kellogg EA, Hufford MB. Seetharam AS, et al. Among authors: meyers bc. Front Plant Sci. 2021 Oct 4;12:710383. doi: 10.3389/fpls.2021.710383. eCollection 2021. Front Plant Sci. 2021. PMID: 34671369 Free PMC article.
The peculiar floral morphology of Streptochaeta may thus have derived from an ancestral plant that was morphologically similar to the spikelet-bearing grasses. We further identify 114 loci producing microRNAs and 89 loci generating phased, secondary siRNAs, classes of smal …
The peculiar floral morphology of Streptochaeta may thus have derived from an ancestral plant that was morphologically similar to the …
Genome Assembly and Transcriptome of Colletotrichum sublineola CsGL1, a New Resource to Study Anthracnose Disease in Sorghum.
Baldrich P, Chaya T, Caplan JL, Meyers BC. Baldrich P, et al. Among authors: meyers bc. Mol Plant Microbe Interact. 2021 Oct;34(10):1209-1211. doi: 10.1094/MPMI-04-21-0094-A. Epub 2021 Oct 18. Mol Plant Microbe Interact. 2021. PMID: 34662144 Free article.
Here, we used PacBio sequencing combined with RNA-seq to generate a chromosome-level assembly and annotation of the Colletotrichum sublineola strain CsGL1.[Formula: see text] Copyright 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 …
Here, we used PacBio sequencing combined with RNA-seq to generate a chromosome-level assembly and annotation of the Colletotrichum sublineol …
Quality control and evaluation of plant epigenomics data.
Schmitz RJ, Marand AP, Zhang X, Mosher RA, Turck F, Chen X, Axtell MJ, Zhong X, Brady SM, Megraw M, Meyers BC. Schmitz RJ, et al. Among authors: meyers bc. Plant Cell. 2022 Jan 20;34(1):503-513. doi: 10.1093/plcell/koab255. Plant Cell. 2022. PMID: 34648025 Free PMC article.
The ability to profile the epigenomic landscape associated with genes, repetitive regions, transposons, transcription, differential expression, cis-regulatory elements, and 3D chromatin interactions has vastly improved our understanding of plant genomes. However, many epig …
The ability to profile the epigenomic landscape associated with genes, repetitive regions, transposons, transcription, differential expressi …
Thank you, Editors and Reviewers of The Plant Cell.
Eckardt NA, Meyers BC. Eckardt NA, et al. Among authors: meyers bc. Plant Cell. 2021 Dec 3;33(12):3597-3601. doi: 10.1093/plcell/koab245. Plant Cell. 2021. PMID: 34599326 Free article. No abstract available.
A Novel Method to Map Small RNAs with High Resolution.
Huang K, Demirci F, Meyers BC, Caplan JL. Huang K, et al. Among authors: meyers bc. Bio Protoc. 2021 Aug 20;11(16):e4128. doi: 10.21769/BioProtoc.4128. eCollection 2021 Aug 20. Bio Protoc. 2021. PMID: 34541046 Free article.
Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation.
Wang L, Zhu T, Rodriguez JC, Deal KR, Dubcovsky J, McGuire PE, Lux T, Spannagl M, Mayer KFX, Baldrich P, Meyers BC, Huo N, Gu YQ, Zhou H, Devos KM, Bennetzen JL, Unver T, Budak H, Gulick PJ, Galiba G, Kalapos B, Nelson DR, Li P, You FM, Luo MC, Dvorak J. Wang L, et al. Among authors: meyers bc. G3 (Bethesda). 2021 Dec 8;11(12):jkab325. doi: 10.1093/g3journal/jkab325. G3 (Bethesda). 2021. PMID: 34515796 Free PMC article.
A total of 2245 biologically important genes, including those affecting plant phenology, grain quality, and tolerance of abiotic stresses in wheat, was manually annotated and disease-resistance genes were annotated by a dedicated pipeline. ...
A total of 2245 biologically important genes, including those affecting plant phenology, grain quality, and tolerance of abiotic stre …
Pre-meiotic 21-nucleotide reproductive phasiRNAs emerged in seed plants and diversified in flowering plants.
Pokhrel S, Huang K, Bélanger S, Zhan J, Caplan JL, Kramer EM, Meyers BC. Pokhrel S, et al. Among authors: meyers bc. Nat Commun. 2021 Aug 16;12(1):4941. doi: 10.1038/s41467-021-25128-y. Nat Commun. 2021. PMID: 34400639 Free PMC article.
Plant small RNAs are important regulatory elements that fine-tune gene expression and maintain genome integrity by silencing transposons. ...Although this pathway is apparently absent in well-studied eudicot families including the Brassicaceae, Solanaceae and Fabaceae, our …
Plant small RNAs are important regulatory elements that fine-tune gene expression and maintain genome integrity by silencing transpos …
Conserved and non-conserved triggers of 24-nucleotide reproductive phasiRNAs in eudicots.
Pokhrel S, Huang K, Meyers BC. Pokhrel S, et al. Among authors: meyers bc. Plant J. 2021 Sep;107(5):1332-1345. doi: 10.1111/tpj.15382. Epub 2021 Jul 16. Plant J. 2021. PMID: 34160111
Small RNAs play important roles in plant growth and development by modulating expression of genes and transposons. In many flowering plant species, male reproductive organs, the anthers, produce abundant phased small interfering RNAs (phasiRNAs). ...
Small RNAs play important roles in plant growth and development by modulating expression of genes and transposons. In many flowering …
Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales).
Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. Beric A, et al. Among authors: meyers bc. G3 (Bethesda). 2021 May 16;11(7):jkab140. doi: 10.1093/g3journal/jkab140. Online ahead of print. G3 (Bethesda). 2021. PMID: 33993297 Free PMC article.
Genome sizes of plants have long piqued the interest of researchers due to the vast differences among organisms. ...This order is also home to one of the smallest plant genomes, Arabidopsis thaliana-chosen as the model plant system for this reason-as well as …
Genome sizes of plants have long piqued the interest of researchers due to the vast differences among organisms. ...This order is als …
Gene tagging via CRISPR-mediated homology-directed repair in cassava.
Veley KM, Okwuonu I, Jensen G, Yoder M, Taylor NJ, Meyers BC, Bart RS. Veley KM, et al. Among authors: meyers bc. G3 (Bethesda). 2021 Apr 15;11(4):jkab028. doi: 10.1093/g3journal/jkab028. G3 (Bethesda). 2021. PMID: 33855431 Free PMC article.
Research on a few model plant-pathogen systems has benefitted from years of tool and resource development. ...Using CRISPR-mediated homology-directed repair (HDR), we generated plants containing scarless insertion of GFP at the 3' end of CBB susceptibility (S …
Research on a few model plant-pathogen systems has benefitted from years of tool and resource development. ...Using CRISPR-mediated h …
Portability at a Keystroke.
Baxter I, Blatt M, Meyers B. Baxter I, et al. Among authors: meyers b. Plant Cell. 2020 Aug;32(8):2445. doi: 10.1105/tpc.20.00517. Epub 2020 Jul 31. Plant Cell. 2020. PMID: 33814869 Free PMC article. No abstract available.
THE PLANT CELL Welcomes New Assistant Features Editors.
Eckardt NA, Meyers BC. Eckardt NA, et al. Among authors: meyers bc. Plant Cell. 2020 Mar;32(3):527-528. doi: 10.1105/tpc.20.00035. Epub 2020 Mar 2. Plant Cell. 2020. PMID: 33814868 Free PMC article. No abstract available.
Portability at a Keystroke.
Baxter I, Blatt M, Meyers B. Baxter I, et al. Among authors: meyers b. Plant Physiol. 2020 Aug;183(4):1407. doi: 10.1104/pp.20.00883. Epub 2020 Aug 3. Plant Physiol. 2020. PMID: 33814631 Free PMC article. No abstract available.
Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants.
Patel P, Mathioni SM, Hammond R, Harkess AE, Kakrana A, Arikit S, Dusia A, Meyers BC. Patel P, et al. Among authors: meyers bc. Plant Physiol. 2021 Apr 23;185(4):1764-1782. doi: 10.1093/plphys/kiab001. Plant Physiol. 2021. PMID: 33793935 Free PMC article.
This curated database of phylogenetically diverse monocot miRNAs, siRNAs, and phasiRNAs represents a large collection of data that should facilitate continued exploration of sRNA diversification in flowering plants....
This curated database of phylogenetically diverse monocot miRNAs, siRNAs, and phasiRNAs represents a large collection of data that should fa …
Thank You, Editors and Reviewers of The Plant Cell.
Eckardt NA, Meyers BC. Eckardt NA, et al. Among authors: meyers bc. Plant Cell. 2020 Dec 4;32(12):3639-3645. doi: 10.1105/tpc.20.00878. Plant Cell. 2020. PMID: 33792696 Free PMC article. No abstract available.
ASPB welcomes Oxford University Press.
Blatt MR, Meyers BC. Blatt MR, et al. Among authors: meyers bc. Plant Cell. 2021 Mar 22;33(1):1. doi: 10.1093/plcell/koaa004. Plant Cell. 2021. PMID: 33751097 Free PMC article. No abstract available.
The Plant Cell welcomes 2021 Assistant Features Editors.
Eckardt NA, Meyers BC. Eckardt NA, et al. Among authors: meyers bc. Plant Cell. 2021 Mar 22;33(1):2. doi: 10.1093/plcell/koaa005. Plant Cell. 2021. PMID: 33751091 Free PMC article. No abstract available.
Transgenerational conditioned male fertility of HD-ZIP IV transcription factor mutant ocl4: impact on 21-nt phasiRNA accumulation in pre-meiotic maize anthers.
Yadava P, Tamim S, Zhang H, Teng C, Zhou X, Meyers BC, Walbot V. Yadava P, et al. Among authors: meyers bc. Plant Reprod. 2021 Jun;34(2):117-129. doi: 10.1007/s00497-021-00406-3. Epub 2021 Mar 10. Plant Reprod. 2021. PMID: 33689028
Maize Outer cell layer 4 (ocl4) encodes an HD-ZIP IV transcription factor required for robust male fertility and 21-nt phasiRNA biogenesis. ocl4 fertility is favored in warm conditions, and phasiRNAs are partially restored. Environment-sensitive male-sterile plants have be …
Maize Outer cell layer 4 (ocl4) encodes an HD-ZIP IV transcription factor required for robust male fertility and 21-nt phasiRNA biogenesis. …
sRNAanno-a database repository of uniformly annotated small RNAs in plants.
Chen C, Li J, Feng J, Liu B, Feng L, Yu X, Li G, Zhai J, Meyers BC, Xia R. Chen C, et al. Among authors: meyers bc. Hortic Res. 2021 Mar 1;8(1):45. doi: 10.1038/s41438-021-00480-8. Hortic Res. 2021. PMID: 33642576 Free PMC article.
Excluding miRNAs, the other two classes are not well annotated or available in public databases for most sequenced plant genomes. We performed a comprehensive sRNA annotation of 143 plant species that have fully sequenced genomes and next-generation sequencing sRNA …
Excluding miRNAs, the other two classes are not well annotated or available in public databases for most sequenced plant genomes. We …
ASPB welcomes Oxford University Press.
Blatt MR, Meyers BC. Blatt MR, et al. Among authors: meyers bc. Plant Physiol. 2021 Feb 25;185(1):15. doi: 10.1093/plphys/kiaa025. Plant Physiol. 2021. PMID: 33631816 Free PMC article. No abstract available.
Focus on the biology of plant genomes.
Eckardt NA, Birchler JA, Brady SM, Buell CR, Leebens-Mack JH, Meyers BC. Eckardt NA, et al. Among authors: meyers bc. Plant Cell. 2021 May 31;33(4):781-782. doi: 10.1093/plcell/koab039. Plant Cell. 2021. PMID: 33576423 Free PMC article. No abstract available.
Space: the final frontier - achieving single-cell, spatially resolved transcriptomics in plants.
Gurazada SGR, Cox KL, Czymmek KJ, Meyers BC. Gurazada SGR, et al. Among authors: meyers bc. Emerg Top Life Sci. 2021 May 21;5(2):179-188. doi: 10.1042/ETLS20200274. Emerg Top Life Sci. 2021. PMID: 33522561
These methods typically require cell sorting, transgenic plants, protoplasting, or other damaging or laborious processes. Additionally, the majority of these technologies lose most or all spatial resolution during implementation. ...Here, we briefly review the evolution of …
These methods typically require cell sorting, transgenic plants, protoplasting, or other damaging or laborious processes. Additionall …
Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production.
Harkess A, McLoughlin F, Bilkey N, Elliott K, Emenecker R, Mattoon E, Miller K, Czymmek K, Vierstra RD, Meyers BC, Michael TP. Harkess A, et al. Among authors: meyers bc. J Exp Bot. 2021 Mar 29;72(7):2491-2500. doi: 10.1093/jxb/erab006. J Exp Bot. 2021. PMID: 33454741
Using Oxford Nanopore sequencing combined with Hi-C scaffolding, we generated a highly contiguous, chromosome-scale assembly of S. polyrhiza line Sp7498 (Sp7498_HiC). Both the Sp7498_HiC and Sp9509 genome assemblies reveal large chromosomal misorientations relative to a re …
Using Oxford Nanopore sequencing combined with Hi-C scaffolding, we generated a highly contiguous, chromosome-scale assembly of S. po …
A transposon surveillance mechanism that safeguards plant male fertility during stress.
Lee YS, Maple R, Dürr J, Dawson A, Tamim S, Del Genio C, Papareddy R, Luo A, Lamb JC, Amantia S, Sylvester AW, Birchler JA, Meyers BC, Nodine MD, Rouster J, Gutierrez-Marcos J. Lee YS, et al. Among authors: meyers bc. Nat Plants. 2021 Jan;7(1):34-41. doi: 10.1038/s41477-020-00818-5. Epub 2021 Jan 4. Nat Plants. 2021. PMID: 33398155
Although plants are able to withstand a range of environmental conditions, spikes in ambient temperature can impact plant fertility causing reductions in seed yield and notable economic losses(1,2). Therefore, understanding the precise molecular mechanisms that unde …
Although plants are able to withstand a range of environmental conditions, spikes in ambient temperature can impact plant fert …
Deconvoluting apocarotenoid-mediated retrograde signaling networks regulating plastid translation and leaf development.
Escobar-Tovar L, Sierra J, Hernández-Muñoz A, McQuinn RP, Mathioni S, Cordoba E, Colas des Francs-Small C, Meyers BC, Pogson B, León P. Escobar-Tovar L, et al. Among authors: meyers bc. Plant J. 2021 Mar;105(6):1582-1599. doi: 10.1111/tpj.15134. Epub 2021 Mar 8. Plant J. 2021. PMID: 33340183 Free article.
Signals originating within plastids modulate organelle differentiation by transcriptionally regulating nuclear-encoded genes. These retrograde signals are also integral regulators of plant development, including leaf morphology. The clb5 mutant displays severe leaf morphol …
Signals originating within plastids modulate organelle differentiation by transcriptionally regulating nuclear-encoded genes. These retrogra …
CHH DNA methylation increases at 24-PHAS loci depend on 24-nt phased small interfering RNAs in maize meiotic anthers.
Zhang M, Ma X, Wang C, Li Q, Meyers BC, Springer NM, Walbot V. Zhang M, et al. Among authors: meyers bc. New Phytol. 2021 Mar;229(5):2984-2997. doi: 10.1111/nph.17060. Epub 2020 Dec 12. New Phytol. 2021. PMID: 33135165 Free article.
Plant phased small interfering RNAs (phasiRNAs) contribute to robust male fertility; however, specific functions remain undefined. ...Based on sequence capture bisulfite-sequencing, we find that CHH DNA methylation of most 24-PHAS loci is increased in meiotic anthers of co …
Plant phased small interfering RNAs (phasiRNAs) contribute to robust male fertility; however, specific functions remain undefined. .. …
Soybean DICER-LIKE2 Regulates Seed Coat Color via Production of Primary 22-Nucleotide Small Interfering RNAs from Long Inverted Repeats.
Jia J, Ji R, Li Z, Yu Y, Nakano M, Long Y, Feng L, Qin C, Lu D, Zhan J, Xia R, Meyers BC, Liu B, Zhai J. Jia J, et al. Among authors: meyers bc. Plant Cell. 2020 Dec;32(12):3662-3673. doi: 10.1105/tpc.20.00562. Epub 2020 Oct 19. Plant Cell. 2020. PMID: 33077493 Free PMC article.
In plants, 22-nucleotide small RNAs trigger the production of secondary small interfering RNAs (siRNAs) and enhance silencing. ...
In plants, 22-nucleotide small RNAs trigger the production of secondary small interfering RNAs (siRNAs) and enhance silencing. ...
Developmental Genetics of Corolla Tube Formation: Role of the tasiRNA-ARF Pathway and a Conceptual Model.
Ding B, Xia R, Lin Q, Gurung V, Sagawa JM, Stanley LE, Strobel M, Diggle PK, Meyers BC, Yuan YW. Ding B, et al. Among authors: meyers bc. Plant Cell. 2020 Nov;32(11):3452-3468. doi: 10.1105/tpc.18.00471. Epub 2020 Sep 11. Plant Cell. 2020. PMID: 32917737 Free PMC article.
The corolla tube contributes to the tremendous diversity of flower morphology and plays a critical role in plant reproduction, yet it remains one of the least understood plant structures from a developmental genetics perspective. ...
The corolla tube contributes to the tremendous diversity of flower morphology and plays a critical role in plant reproduction, yet it …
PhasiRNAs in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction.
Liu Y, Teng C, Xia R, Meyers BC. Liu Y, et al. Among authors: meyers bc. Plant Cell. 2020 Oct;32(10):3059-3080. doi: 10.1105/tpc.20.00335. Epub 2020 Aug 18. Plant Cell. 2020. PMID: 32817252 Free PMC article. Review.
Phased secondary small interfering RNAs (phasiRNAs) constitute a major category of small RNAs in plants, but most of their functions are still poorly defined. Some phasiRNAs, known as trans-acting siRNAs, are known to target complementary mRNAs for degradation and to funct …
Phased secondary small interfering RNAs (phasiRNAs) constitute a major category of small RNAs in plants, but most of their functions …
Quantitative, super-resolution localization of small RNAs with sRNA-PAINT.
Huang K, Demirci F, Batish M, Treible W, Meyers BC, Caplan JL. Huang K, et al. Among authors: meyers bc. Nucleic Acids Res. 2020 Sep 18;48(16):e96. doi: 10.1093/nar/gkaa623. Nucleic Acids Res. 2020. PMID: 32716042 Free PMC article.
Small RNAs are non-coding RNAs that play important roles in the lives of both animals and plants. They are 21- to 24-nt in length and 10 nm in size. Their small size and high diversity have made it challenging to develop detection methods that have sufficient resolution an …
Small RNAs are non-coding RNAs that play important roles in the lives of both animals and plants. They are 21- to 24-nt in length and …
Quantitative Fluorescence In Situ Hybridization Detection of Plant mRNAs with Single-Molecule Resolution.
Huang K, Batish M, Teng C, Harkess A, Meyers BC, Caplan JL. Huang K, et al. Among authors: meyers bc. Methods Mol Biol. 2020;2166:23-33. doi: 10.1007/978-1-0716-0712-1_2. Methods Mol Biol. 2020. PMID: 32710401
This protocol describes an smFISH method optimized for highly autofluorescent plant tissue. It provides details on fixation buffers and protocols to protect the integrity of plant samples. We also provide smFISH hybridization conditions to detect plant RNA wi …
This protocol describes an smFISH method optimized for highly autofluorescent plant tissue. It provides details on fixation buffers a …
Abundant expression of maternal siRNAs is a conserved feature of seed development.
Grover JW, Burgess D, Kendall T, Baten A, Pokhrel S, King GJ, Meyers BC, Freeling M, Mosher RA. Grover JW, et al. Among authors: meyers bc. Proc Natl Acad Sci U S A. 2020 Jun 30;117(26):15305-15315. doi: 10.1073/pnas.2001332117. Epub 2020 Jun 15. Proc Natl Acad Sci U S A. 2020. PMID: 32541052 Free PMC article.
Small RNAs are abundant in plant reproductive tissues, especially 24-nucleotide (nt) small interfering RNAs (siRNAs). ...
Small RNAs are abundant in plant reproductive tissues, especially 24-nucleotide (nt) small interfering RNAs (siRNAs). ...
Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize.
Teng C, Zhang H, Hammond R, Huang K, Meyers BC, Walbot V. Teng C, et al. Among authors: meyers bc. Nat Commun. 2020 Jun 9;11(1):2912. doi: 10.1038/s41467-020-16634-6. Nat Commun. 2020. PMID: 32518237 Free PMC article.
Small RNAs play important roles during plant development by regulating transcript levels of target mRNAs, maintaining genome integrity, and reinforcing DNA methylation. Dicer-like 5 (Dcl5) is proposed to be responsible for precise slicing in many monocots to generate diver …
Small RNAs play important roles during plant development by regulating transcript levels of target mRNAs, maintaining genome integrit …
257 results