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Andromeda: a peptide search engine integrated into the MaxQuant environment.

Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M. Cox J, et al. Among authors: michalski a. J Proteome Res. 2011 Apr 1;10(4):1794-805. doi: 10.1021/pr101065j. Epub 2011 Feb 22. J Proteome Res. 2011. PMID: 21254760

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The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics.

Beck S, Michalski A, Raether O, Lubeck M, Kaspar S, Goedecke N, Baessmann C, Hornburg D, Meier F, Paron I, Kulak NA, Cox J, Mann M. Beck S, et al. Among authors: michalski a. Mol Cell Proteomics. 2015 Jul;14(7):2014-29. doi: 10.1074/mcp.M114.047407. Epub 2015 May 19. Mol Cell Proteomics. 2015. PMID: 25991688 Free PMC article.

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A systematic investigation into the nature of tryptic HCD spectra.

Michalski A, Neuhauser N, Cox J, Mann M. Michalski A, et al. J Proteome Res. 2012 Nov 2;11(11):5479-91. doi: 10.1021/pr3007045. Epub 2012 Oct 10. J Proteome Res. 2012. PMID: 22998608

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Expert system for computer-assisted annotation of MS/MS spectra.

Neuhauser N, Michalski A, Cox J, Mann M. Neuhauser N, et al. Among authors: michalski a. Mol Cell Proteomics. 2012 Nov;11(11):1500-9. doi: 10.1074/mcp.M112.020271. Epub 2012 Aug 10. Mol Cell Proteomics. 2012. PMID: 22888147 Free PMC article.

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Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes.

Michalski A, Damoc E, Lange O, Denisov E, Nolting D, Müller M, Viner R, Schwartz J, Remes P, Belford M, Dunyach JJ, Cox J, Horning S, Mann M, Makarov A. Michalski A, et al. Mol Cell Proteomics. 2012 Mar;11(3):O111.013698. doi: 10.1074/mcp.O111.013698. Epub 2011 Dec 9. Mol Cell Proteomics. 2012. PMID: 22159718 Free PMC article.

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Software lock mass by two-dimensional minimization of peptide mass errors.

Cox J, Michalski A, Mann M. Cox J, et al. Among authors: michalski a. J Am Soc Mass Spectrom. 2011 Aug;22(8):1373-80. doi: 10.1007/s13361-011-0142-8. Epub 2011 Apr 22. J Am Soc Mass Spectrom. 2011. PMID: 21953191 Free PMC article.

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Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

Michalski A, Damoc E, Hauschild JP, Lange O, Wieghaus A, Makarov A, Nagaraj N, Cox J, Mann M, Horning S. Michalski A, et al. Mol Cell Proteomics. 2011 Sep;10(9):M111.011015. doi: 10.1074/mcp.M111.011015. Epub 2011 Jun 3. Mol Cell Proteomics. 2011. PMID: 21642640 Free PMC article.

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More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

Michalski A, Cox J, Mann M. Michalski A, et al. J Proteome Res. 2011 Apr 1;10(4):1785-93. doi: 10.1021/pr101060v. Epub 2011 Feb 28. J Proteome Res. 2011. PMID: 21309581

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Pre-pregnancy exposure to arsenic in diet and non-cardiac birth defects.

Suhl J, Conway KM, Rhoads A, Langlois PH, Feldkamp ML, Michalski AM, Oleson JJ, Sidhu A, Kancherla V, Obrycki J, Mazumdar M, Romitti PA; National Birth Defects Prevention Study. Suhl J, et al. Among authors: michalski am. Public Health Nutr. 2022 May 27:1-13. doi: 10.1017/S1368980022001318. Online ahead of print. Public Health Nutr. 2022. PMID: 35620934

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Timing of Circumcision and Breastfeeding Frequency: A Multicenter, Randomized Clinical Trial.

Mondzelewski L, Mu T, Michalski A, Ward J, Cheng L, Chen M, Riffenburgh R, Holmes A. Mondzelewski L, et al. Among authors: michalski a. Hosp Pediatr. 2022 Jun 1;12(6):555-560. doi: 10.1542/hpeds.2021-006400. Hosp Pediatr. 2022. PMID: 35574656 Clinical Trial.

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