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ComplexViewer: visualization of curated macromolecular complexes.
Combe CW, Sivade MD, Hermjakob H, Heimbach J, Meldal BHM, Micklem G, Orchard S, Rappsilber J. Combe CW, et al. Among authors: micklem g. Bioinformatics. 2017 Nov 15;33(22):3673-3675. doi: 10.1093/bioinformatics/btx497. Bioinformatics. 2017. PMID: 29036573 Free PMC article.
InterMineR: an R package for InterMine databases.
Kyritsis KA, Wang B, Sullivan J, Lyne R, Micklem G. Kyritsis KA, et al. Among authors: micklem g. Bioinformatics. 2019 Sep 1;35(17):3206-3207. doi: 10.1093/bioinformatics/btz039. Bioinformatics. 2019. PMID: 30668641 Free PMC article.
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G. Smith RN, et al. Among authors: micklem g. Bioinformatics. 2012 Dec 1;28(23):3163-5. doi: 10.1093/bioinformatics/bts577. Epub 2012 Sep 27. Bioinformatics. 2012. PMID: 23023984 Free PMC article.
AVAILABILITY: Freely available from under the LGPL license. CONTACT: SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY: Freely available from under the LGPL license. CONTACT: SUPPLEME …
modMine: flexible access to modENCODE data.
Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, Micklem G. Contrino S, et al. Among authors: micklem g. Nucleic Acids Res. 2012 Jan;40(Database issue):D1082-8. doi: 10.1093/nar/gkr921. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080565 Free PMC article.
InterMine: extensive web services for modern biology.
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R, Stěpán R, Sullivan J, Micklem G. Kalderimis A, et al. Among authors: micklem g. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W468-72. doi: 10.1093/nar/gku301. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753429 Free PMC article.
Bayesian modelling of shared gene function.
Sykacek P, Clarkson R, Print C, Furlong R, Micklem G. Sykacek P, et al. Among authors: micklem g. Bioinformatics. 2007 Aug 1;23(15):1936-44. doi: 10.1093/bioinformatics/btm280. Epub 2007 May 31. Bioinformatics. 2007. PMID: 17540682
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, Lovering RC, Lynn DJ, Meldal BHM, Micklem G, Panni S, Porras P, Ricard-Blum S, Roechert B, Salwinski L, Shrivastava A, Sullivan J, Thierry-Mieg N, Yehudi Y, Van Roey K, Orchard S. Sivade Dumousseau M, et al. Among authors: micklem g. BMC Bioinformatics. 2018 Apr 11;19(1):134. doi: 10.1186/s12859-018-2118-1. BMC Bioinformatics. 2018. PMID: 29642841 Free PMC article.
58 results