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ComplexViewer: visualization of curated macromolecular complexes.
Combe CW, Sivade MD, Hermjakob H, Heimbach J, Meldal BHM, Micklem G, Orchard S, Rappsilber J. Combe CW, et al. Among authors: micklem g. Bioinformatics. 2017 Nov 15;33(22):3673-3675. doi: 10.1093/bioinformatics/btx497. Bioinformatics. 2017. PMID: 29036573 Free PMC article.
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, Lovering RC, Lynn DJ, Meldal BHM, Micklem G, Panni S, Porras P, Ricard-Blum S, Roechert B, Salwinski L, Shrivastava A, Sullivan J, Thierry-Mieg N, Yehudi Y, Van Roey K, Orchard S. Sivade Dumousseau M, et al. Among authors: micklem g. BMC Bioinformatics. 2018 Apr 11;19(1):134. doi: 10.1186/s12859-018-2118-1. BMC Bioinformatics. 2018. PMID: 29642841 Free PMC article.
InterMineR: an R package for InterMine databases.
Kyritsis KA, Wang B, Sullivan J, Lyne R, Micklem G. Kyritsis KA, et al. Among authors: micklem g. Bioinformatics. 2019 Sep 1;35(17):3206-3207. doi: 10.1093/bioinformatics/btz039. Bioinformatics. 2019. PMID: 30668641 Free PMC article.
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G. Smith RN, et al. Among authors: micklem g. Bioinformatics. 2012 Dec 1;28(23):3163-5. doi: 10.1093/bioinformatics/bts577. Epub 2012 Sep 27. Bioinformatics. 2012. PMID: 23023984 Free PMC article.
AVAILABILITY: Freely available from http://www.intermine.org under the LGPL license. CONTACT: g.micklem@gen.cam.ac.uk SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
AVAILABILITY: Freely available from http://www.intermine.org under the LGPL license. CONTACT: g.micklem@gen.cam.ac.uk SUPPLEME …
esyN: network building, sharing and publishing.
Bean DM, Heimbach J, Ficorella L, Micklem G, Oliver SG, Favrin G. Bean DM, et al. Among authors: micklem g. PLoS One. 2014 Sep 2;9(9):e106035. doi: 10.1371/journal.pone.0106035. eCollection 2014. PLoS One. 2014. PMID: 25181461 Free PMC article.
Cross-organism analysis using InterMine.
Lyne R, Sullivan J, Butano D, Contrino S, Heimbach J, Hu F, Kalderimis A, Lyne M, Smith RN, Štěpán R, Balakrishnan R, Binkley G, Harris T, Karra K, Moxon SA, Motenko H, Neuhauser S, Ruzicka L, Cherry M, Richardson J, Stein L, Westerfield M, Worthey E, Micklem G. Lyne R, et al. Among authors: micklem g. Genesis. 2015 Aug;53(8):547-60. doi: 10.1002/dvg.22869. Epub 2015 Jul 8. Genesis. 2015. PMID: 26097192 Free PMC article. Review.
A friendly statistics package for microarray analysis.
Sykacek P, Furlong RA, Micklem G. Sykacek P, et al. Among authors: micklem g. Bioinformatics. 2005 Nov 1;21(21):4069-70. doi: 10.1093/bioinformatics/bti663. Epub 2005 Sep 27. Bioinformatics. 2005. PMID: 16188932
InterMine: extensive web services for modern biology.
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R, Stěpán R, Sullivan J, Micklem G. Kalderimis A, et al. Among authors: micklem g. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W468-72. doi: 10.1093/nar/gku301. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753429 Free PMC article.
HumanMine: advanced data searching, analysis and cross-species comparison.
Lyne R, Bazaga A, Butano D, Contrino S, Heimbach J, Hu F, Kalderimis A, Lyne M, Reierskog K, Stepan R, Sullivan J, Wise A, Yehudi Y, Micklem G. Lyne R, et al. Among authors: micklem g. Database (Oxford). 2022 Jul 12;2022:baac054. doi: 10.1093/database/baac054. Database (Oxford). 2022. PMID: 35820040 Free PMC article.
Correction: esyN: Network Building, Sharing and Publishing.
Bean DM, Heimbach J, Ficorella L, Micklem G, Oliver SG, Favrin G. Bean DM, et al. Among authors: micklem g. PLoS One. 2019 Jan 9;14(1):e0204058. doi: 10.1371/journal.pone.0204058. eCollection 2019. PLoS One. 2019. PMID: 30625146 Free PMC article.
60 results