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Page 1
CryptoDB: a Cryptosporidium bioinformatics resource update.
Heiges M, Wang H, Robinson E, Aurrecoechea C, Gao X, Kaluskar N, Rhodes P, Wang S, He CZ, Su Y, Miller J, Kraemer E, Kissinger JC. Heiges M, et al. Among authors: miller j. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D419-22. doi: 10.1093/nar/gkj078. Nucleic Acids Res. 2006. PMID: 16381902 Free PMC article.
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis.
Aurrecoechea C, Brestelli J, Brunk BP, Carlton JM, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Morrison HG, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ Jr, Sullivan S, Treatman C, Wang H. Aurrecoechea C, et al. Among authors: miller ja. Nucleic Acids Res. 2009 Jan;37(Database issue):D526-30. doi: 10.1093/nar/gkn631. Epub 2008 Sep 29. Nucleic Acids Res. 2009. PMID: 18824479 Free PMC article.
PlasmoDB: a functional genomic database for malaria parasites.
Aurrecoechea C, Brestelli J, Brunk BP, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ Jr, Treatman C, Wang H. Aurrecoechea C, et al. Among authors: miller ja. Nucleic Acids Res. 2009 Jan;37(Database issue):D539-43. doi: 10.1093/nar/gkn814. Epub 2008 Oct 28. Nucleic Acids Res. 2009. PMID: 18957442 Free PMC article.
TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H. Aslett M, et al. Among authors: miller ja. Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20. Nucleic Acids Res. 2010. PMID: 19843604 Free PMC article.
EuPathDB: a portal to eukaryotic pathogen databases.
Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H. Aurrecoechea C, et al. Among authors: miller ja. Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13. Nucleic Acids Res. 2010. PMID: 19914931 Free PMC article.
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.
Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC. Aurrecoechea C, et al. Among authors: miller j. Nucleic Acids Res. 2007 Jan;35(Database issue):D427-30. doi: 10.1093/nar/gkl880. Epub 2006 Nov 10. Nucleic Acids Res. 2007. PMID: 17098930 Free PMC article.
Mapping by sequencing the Pneumocystis genome using the ordering DNA sequences V3 tool.
Xu Z, Lance B, Vargas C, Arpinar B, Bhandarkar S, Kraemer E, Kochut KJ, Miller JA, Wagner JR, Weise MJ, Wunderlich JK, Stringer J, Smulian G, Cushion MT, Arnold J. Xu Z, et al. Among authors: miller ja. Genetics. 2003 Apr;163(4):1299-313. doi: 10.1093/genetics/163.4.1299. Genetics. 2003. PMID: 12702676 Free PMC article.
EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.
Al Jadda K, Porterfield MP, Bridger R, Heiss C, Tiemeyer M, Wells L, Miller JA, York WS, Ranzinger R. Al Jadda K, et al. Bioinformatics. 2015 Jan 15;31(2):242-5. doi: 10.1093/bioinformatics/btu609. Epub 2014 Sep 12. Bioinformatics. 2015. PMID: 25217575 Free PMC article.
Qrator: a web-based curation tool for glycan structures.
Eavenson M, Kochut KJ, Miller JA, Ranzinger R, Tiemeyer M, Aoki K, York WS. Eavenson M, et al. Among authors: miller ja. Glycobiology. 2015 Jan;25(1):66-73. doi: 10.1093/glycob/cwu090. Epub 2014 Aug 27. Glycobiology. 2015. PMID: 25165068 Free PMC article.
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