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1,010 results
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FLOG: a system to select 'quasi-flexible' ligands complementary to a receptor of known three-dimensional structure.
Miller MD, Kearsley SK, Underwood DJ, Sheridan RP. Miller MD, et al. J Comput Aided Mol Des. 1994 Apr;8(2):153-74. doi: 10.1007/BF00119865. J Comput Aided Mol Des. 1994. PMID: 8064332
SQ: a program for rapidly producing pharmacophorically relevent molecular superpositions.
Miller MD, Sheridan RP, Kearsley SK. Miller MD, et al. J Med Chem. 1999 May 6;42(9):1505-14. doi: 10.1021/jm9806143. J Med Chem. 1999. PMID: 10229621
Advances in automated docking applied to human immunodeficiency virus type 1 protease.
Miller MD, Sheridan RP, Kearsley SK, Underwood DJ. Miller MD, et al. Methods Enzymol. 1994;241:354-70. doi: 10.1016/0076-6879(94)41073-9. Methods Enzymol. 1994. PMID: 7854188 No abstract available.
Flexibases: a way to enhance the use of molecular docking methods.
Kearsley SK, Underwood DJ, Sheridan RP, Miller MD. Kearsley SK, et al. Among authors: miller md. J Comput Aided Mol Des. 1994 Oct;8(5):565-82. doi: 10.1007/BF00123666. J Comput Aided Mol Des. 1994. PMID: 7876901
Comparison of knowledge-based and distance geometry approaches for generation of molecular conformations.
Feuston BP, Miller MD, Culberson JC, Nachbar RB, Kearsley SK. Feuston BP, et al. Among authors: miller md. J Chem Inf Comput Sci. 2001 May-Jun;41(3):754-63. doi: 10.1021/ci000464g. J Chem Inf Comput Sci. 2001. PMID: 11410056
A human monoclonal antibody neutralizes diverse HIV-1 isolates by binding a critical gp41 epitope.
Miller MD, Geleziunas R, Bianchi E, Lennard S, Hrin R, Zhang H, Lu M, An Z, Ingallinella P, Finotto M, Mattu M, Finnefrock AC, Bramhill D, Cook J, Eckert DM, Hampton R, Patel M, Jarantow S, Joyce J, Ciliberto G, Cortese R, Lu P, Strohl W, Schleif W, McElhaugh M, Lane S, Lloyd C, Lowe D, Osbourn J, Vaughan T, Emini E, Barbato G, Kim PS, Hazuda DJ, Shiver JW, Pessi A. Miller MD, et al. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14759-64. doi: 10.1073/pnas.0506927102. Epub 2005 Oct 3. Proc Natl Acad Sci U S A. 2005. PMID: 16203977 Free PMC article.
Structural analysis of the epitope of the anti-HIV antibody 2F5 sheds light into its mechanism of neutralization and HIV fusion.
Barbato G, Bianchi E, Ingallinella P, Hurni WH, Miller MD, Ciliberto G, Cortese R, Bazzo R, Shiver JW, Pessi A. Barbato G, et al. Among authors: miller md. J Mol Biol. 2003 Jul 25;330(5):1101-15. doi: 10.1016/s0022-2836(03)00611-9. J Mol Biol. 2003. PMID: 12860131
Inhibition of HIV-1 ribonuclease H by a novel diketo acid, 4-[5-(benzoylamino)thien-2-yl]-2,4-dioxobutanoic acid.
Shaw-Reid CA, Munshi V, Graham P, Wolfe A, Witmer M, Danzeisen R, Olsen DB, Carroll SS, Embrey M, Wai JS, Miller MD, Cole JL, Hazuda DJ. Shaw-Reid CA, et al. Among authors: miller md. J Biol Chem. 2003 Jan 31;278(5):2777-80. doi: 10.1074/jbc.C200621200. Epub 2002 Dec 11. J Biol Chem. 2003. PMID: 12480948
Derivatives of mesoxalic acid block translocation of HIV-1 reverse transcriptase.
Bernatchez JA, Paul R, Tchesnokov EP, Ngure M, Beilhartz GL, Berghuis AM, Lavoie R, Li L, Auger A, Melnyk RA, Grobler JA, Miller MD, Hazuda DJ, Hecht SM, Götte M. Bernatchez JA, et al. Among authors: miller md. J Biol Chem. 2015 Jan 16;290(3):1474-84. doi: 10.1074/jbc.M114.614305. Epub 2014 Oct 29. J Biol Chem. 2015. PMID: 25355312 Free PMC article.
Progress towards the development of a HIV-1 gp41-directed vaccine.
McGaughey GB, Barbato G, Bianchi E, Freidinger RM, Garsky VM, Hurni WM, Joyce JG, Liang X, Miller MD, Pessi A, Shiver JW, Bogusky MJ. McGaughey GB, et al. Among authors: miller md. Curr HIV Res. 2004 Apr;2(2):193-204. doi: 10.2174/1570162043484933. Curr HIV Res. 2004. PMID: 15078183 Review.
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