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UFBoot2: Improving the Ultrafast Bootstrap Approximation.
Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. Hoang DT, et al. Among authors: minh bq. Mol Biol Evol. 2018 Feb 1;35(2):518-522. doi: 10.1093/molbev/msx281. Mol Biol Evol. 2018. PMID: 29077904 Free PMC article.
Phylogenetic diversity within seconds.
Minh BQ, Klaere S, von Haeseler A. Minh BQ, et al. Syst Biol. 2006 Oct;55(5):769-73. doi: 10.1080/10635150600981604. Syst Biol. 2006. PMID: 17060198
Budgeted phylogenetic diversity on circular split systems.
Minh BQ, Pardi F, Klaere S, von Haeseler A. Minh BQ, et al. IEEE/ACM Trans Comput Biol Bioinform. 2009 Jan-Mar;6(1):22-9. doi: 10.1109/TCBB.2008.54. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19179696
Taxon Selection under Split Diversity.
Minh BQ, Klaere S, von Haeseler A. Minh BQ, et al. Syst Biol. 2009 Dec;58(6):586-94. doi: 10.1093/sysbio/syp058. Epub 2009 Sep 21. Syst Biol. 2009. PMID: 20525611
Ultrafast approximation for phylogenetic bootstrap.
Minh BQ, Nguyen MA, von Haeseler A. Minh BQ, et al. Mol Biol Evol. 2013 May;30(5):1188-95. doi: 10.1093/molbev/mst024. Epub 2013 Feb 15. Mol Biol Evol. 2013. PMID: 23418397 Free PMC article.
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects.
Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B. Dell'Ampio E, et al. Among authors: minh bq. Mol Biol Evol. 2014 Jan;31(1):239-49. doi: 10.1093/molbev/mst196. Epub 2013 Oct 18. Mol Biol Evol. 2014. PMID: 24140757 Free PMC article.
The phylogenetic likelihood library.
Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. Flouri T, et al. Among authors: minh bq. Syst Biol. 2015 Mar;64(2):356-62. doi: 10.1093/sysbio/syu084. Epub 2014 Oct 30. Syst Biol. 2015. PMID: 25358969 Free PMC article.
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. Nguyen LT, et al. Among authors: minh bq. Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3. Mol Biol Evol. 2015. PMID: 25371430 Free PMC article.
Split diversity in constrained conservation prioritization using integer linear programming.
Chernomor O, Minh BQ, Forest F, Klaere S, Ingram T, Henzinger M, von Haeseler A. Chernomor O, et al. Among authors: minh bq. Methods Ecol Evol. 2015 Jan;6(1):83-91. doi: 10.1111/2041-210X.12299. Epub 2014 Dec 6. Methods Ecol Evol. 2015. PMID: 25893087 Free PMC article.
Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference.
Chernomor O, Minh BQ, von Haeseler A. Chernomor O, et al. Among authors: minh bq. J Comput Biol. 2015 Dec;22(12):1129-42. doi: 10.1089/cmb.2015.0146. Epub 2015 Oct 8. J Comput Biol. 2015. PMID: 26448206 Free PMC article.
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