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Deletional bias and the evolution of bacterial genomes.
Mira A, Ochman H, Moran NA. Mira A, et al. Trends Genet. 2001 Oct;17(10):589-96. doi: 10.1016/s0168-9525(01)02447-7. Trends Genet. 2001. PMID: 11585665 Review.
The Neolithic revolution of bacterial genomes.
Mira A, Pushker R, Rodríguez-Valera F. Mira A, et al. Trends Microbiol. 2006 May;14(5):200-6. doi: 10.1016/j.tim.2006.03.001. Epub 2006 Mar 29. Trends Microbiol. 2006. PMID: 16569502 Review.
Characterization of the genome composition of Bartonella koehlerae by microarray comparative genomic hybridization profiling.
Lindroos HL, Mira A, Repsilber D, Vinnere O, Näslund K, Dehio M, Dehio C, Andersson SG. Lindroos HL, et al. Among authors: mira a. J Bacteriol. 2005 Sep;187(17):6155-65. doi: 10.1128/JB.187.17.6155-6165.2005. J Bacteriol. 2005. PMID: 16109957 Free PMC article.
Mining virulence genes using metagenomics.
Belda-Ferre P, Cabrera-Rubio R, Moya A, Mira A. Belda-Ferre P, et al. Among authors: mira a. PLoS One. 2011;6(10):e24975. doi: 10.1371/journal.pone.0024975. Epub 2011 Oct 19. PLoS One. 2011. PMID: 22039404 Free PMC article.
Comparative genomics of gene-family size in closely related bacteria.
Pushker R, Mira A, Rodríguez-Valera F. Pushker R, et al. Among authors: mira a. Genome Biol. 2004;5(4):R27. doi: 10.1186/gb-2004-5-4-r27. Epub 2004 Mar 18. Genome Biol. 2004. PMID: 15059260 Free PMC article.
Comparative genomics of microbial pathogens and symbionts.
Andersson SG, Alsmark C, Canbäck B, Davids W, Frank C, Karlberg O, Klasson L, Antoine-Legault B, Mira A, Tamas I. Andersson SG, et al. Among authors: mira a. Bioinformatics. 2002;18 Suppl 2:S17. doi: 10.1093/bioinformatics/18.suppl_2.s17. Bioinformatics. 2002. PMID: 12385978
Gene location and bacterial sequence divergence.
Mira A, Ochman H. Mira A, et al. Mol Biol Evol. 2002 Aug;19(8):1350-8. doi: 10.1093/oxfordjournals.molbev.a004196. Mol Biol Evol. 2002. PMID: 12140247
Microbial genome evolution: sources of variability.
Mira A, Klasson L, Andersson SG. Mira A, et al. Curr Opin Microbiol. 2002 Oct;5(5):506-12. doi: 10.1016/s1369-5274(02)00358-2. Curr Opin Microbiol. 2002. PMID: 12354559 Review.
The process of genome shrinkage in the obligate symbiont Buchnera aphidicola.
Moran NA, Mira A. Moran NA, et al. Among authors: mira a. Genome Biol. 2001;2(12):RESEARCH0054. doi: 10.1186/gb-2001-2-12-research0054. Epub 2001 Nov 14. Genome Biol. 2001. PMID: 11790257 Free PMC article.
Adapting to environmental changes using specialized paralogs.
Sanchez-Perez G, Mira A, Nyiro G, Pasić L, Rodriguez-Valera F. Sanchez-Perez G, et al. Among authors: mira a. Trends Genet. 2008 Apr;24(4):154-8. doi: 10.1016/j.tig.2008.01.002. Epub 2008 Mar 5. Trends Genet. 2008. PMID: 18325625
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