Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

61 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
SEPP: SATé-enabled phylogenetic placement.
Mirarab S, Nguyen N, Warnow T. Mirarab S, et al. Pac Symp Biocomput. 2012:247-58. doi: 10.1142/9789814366496_0024. Pac Symp Biocomput. 2012. PMID: 22174280
FastSP: linear time calculation of alignment accuracy.
Mirarab S, Warnow T. Mirarab S, et al. Bioinformatics. 2011 Dec 1;27(23):3250-8. doi: 10.1093/bioinformatics/btr553. Epub 2011 Oct 7. Bioinformatics. 2011. PMID: 21984754
MRL and SuperFine+MRL: new supertree methods.
Nguyen N, Mirarab S, Warnow T. Nguyen N, et al. Algorithms Mol Biol. 2012 Jan 26;7(1):3. doi: 10.1186/1748-7188-7-3. Algorithms Mol Biol. 2012. PMID: 22280525 Free PMC article.
Inferring optimal species trees under gene duplication and loss.
Bayzid MS, Mirarab S, Warnow T. Bayzid MS, et al. Pac Symp Biocomput. 2013:250-61. doi: 10.1142/9789814447973_0025. Pac Symp Biocomput. 2013. PMID: 23424130
ASTRAL: genome-scale coalescent-based species tree estimation.
Mirarab S, Reaz R, Bayzid MS, Zimmermann T, Swenson MS, Warnow T. Mirarab S, et al. Bioinformatics. 2014 Sep 1;30(17):i541-8. doi: 10.1093/bioinformatics/btu462. Bioinformatics. 2014. PMID: 25161245 Free PMC article.
Phylotranscriptomic analysis of the origin and early diversification of land plants.
Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels CJ, Pokorny L, Shaw AJ, DeGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, dePamphilis CW, Chen T, Deyholos MK, Baucom RS, Kutchan TM, Augustin MM, Wang J, Zhang Y, Tian Z, Yan Z, Wu X, Sun X, Wong GK, Leebens-Mack J. Wickett NJ, et al. Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):E4859-68. doi: 10.1073/pnas.1323926111. Epub 2014 Oct 29. Proc Natl Acad Sci U S A. 2014. PMID: 25355905 Free PMC article.
TIPP: taxonomic identification and phylogenetic profiling.
Nguyen NP, Mirarab S, Liu B, Pop M, Warnow T. Nguyen NP, et al. Bioinformatics. 2014 Dec 15;30(24):3548-55. doi: 10.1093/bioinformatics/btu721. Epub 2014 Oct 29. Bioinformatics. 2014. PMID: 25359891 Free PMC article.
Whole-genome analyses resolve early branches in the tree of life of modern birds.
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G. Jarvis ED, et al. Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451. Science. 2014. PMID: 25504713 Free PMC article.
Statistical binning enables an accurate coalescent-based estimation of the avian tree.
Mirarab S, Bayzid MS, Boussau B, Warnow T. Mirarab S, et al. Science. 2014 Dec 12;346(6215):1250463. doi: 10.1126/science.1250463. Epub 2014 Dec 11. Science. 2014. PMID: 25504728
61 results
Jump to page
Feedback