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Performance evaluation of existing de novo sequencing algorithms.
Pevtsov S, Fedulova I, Mirzaei H, Buck C, Zhang X. Pevtsov S, et al. Among authors: mirzaei h. J Proteome Res. 2006 Nov;5(11):3018-28. doi: 10.1021/pr060222h. J Proteome Res. 2006. PMID: 17081053
Rapid optimization of MRM-MS instrument parameters by subtle alteration of precursor and product m/z targets.
Sherwood CA, Eastham A, Lee LW, Risler J, Mirzaei H, Falkner JA, Martin DB. Sherwood CA, et al. Among authors: mirzaei h. J Proteome Res. 2009 Jul;8(7):3746-51. doi: 10.1021/pr801122b. J Proteome Res. 2009. PMID: 19405522 Free PMC article.
Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics.
Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H. Guo X, et al. Among authors: mirzaei h. Mol Cell Proteomics. 2014 Jun;13(6):1573-84. doi: 10.1074/mcp.M113.035170. Epub 2014 Apr 2. Mol Cell Proteomics. 2014. PMID: 24696503 Free PMC article.
GOAT--a simple LC-MS/MS gradient optimization tool.
Trudgian DC, Fischer R, Guo X, Kessler BM, Mirzaei H. Trudgian DC, et al. Among authors: mirzaei h. Proteomics. 2014 Jun;14(12):1467-71. doi: 10.1002/pmic.201300524. Epub 2014 May 15. Proteomics. 2014. PMID: 24723505 Free PMC article.
Fucosylation and protein glycosylation create functional receptors for cholera toxin.
Wands AM, Fujita A, McCombs JE, Cervin J, Dedic B, Rodriguez AC, Nischan N, Bond MR, Mettlen M, Trudgian DC, Lemoff A, Quiding-Järbrink M, Gustavsson B, Steentoft C, Clausen H, Mirzaei H, Teneberg S, Yrlid U, Kohler JJ. Wands AM, et al. Among authors: mirzaei h. Elife. 2015 Oct 29;4:e09545. doi: 10.7554/eLife.09545. Elife. 2015. PMID: 26512888 Free PMC article.
Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.
Kato M, Han TW, Xie S, Shi K, Du X, Wu LC, Mirzaei H, Goldsmith EJ, Longgood J, Pei J, Grishin NV, Frantz DE, Schneider JW, Chen S, Li L, Sawaya MR, Eisenberg D, Tycko R, McKnight SL. Kato M, et al. Among authors: mirzaei h. Cell. 2012 May 11;149(4):753-67. doi: 10.1016/j.cell.2012.04.017. Cell. 2012. PMID: 22579281 Free PMC article.
Creation of allotypic active sites during oxidative stress.
Mirzaei H, Regnier F. Mirzaei H, et al. J Proteome Res. 2006 Sep;5(9):2159-68. doi: 10.1021/pr060021d. J Proteome Res. 2006. PMID: 16944927
Protein-RNA cross-linking in the ribosomes of yeast under oxidative stress.
Mirzaei H, Regnier F. Mirzaei H, et al. J Proteome Res. 2006 Dec;5(12):3249-59. doi: 10.1021/pr060337l. J Proteome Res. 2006. PMID: 17137326
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