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Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.
Mirzazadeh R, Kallas T, Bienko M, Crosetto N. Mirzazadeh R, et al. Methods Mol Biol. 2018;1672:167-194. doi: 10.1007/978-1-4939-7306-4_14. Methods Mol Biol. 2018. PMID: 29043625
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.
Yan WX, Mirzazadeh R, Garnerone S, Scott D, Schneider MW, Kallas T, Custodio J, Wernersson E, Li Y, Gao L, Federova Y, Zetsche B, Zhang F, Bienko M, Crosetto N. Yan WX, et al. Among authors: mirzazadeh r. Nat Commun. 2017 May 12;8:15058. doi: 10.1038/ncomms15058. Nat Commun. 2017. PMID: 28497783 Free PMC article.
In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation.
Wu CC, Klaesson A, Buskas J, Ranefall P, Mirzazadeh R, Söderberg O, Wolf JBW. Wu CC, et al. Among authors: mirzazadeh r. J Exp Biol. 2019 Mar 8;222(Pt 5):jeb194431. doi: 10.1242/jeb.194431. J Exp Biol. 2019. PMID: 30718374 Free PMC article.
Modeling double strand break susceptibility to interrogate structural variation in cancer.
Ballinger TJ, Bouwman BAM, Mirzazadeh R, Garnerone S, Crosetto N, Semple CA. Ballinger TJ, et al. Among authors: mirzazadeh r. Genome Biol. 2019 Feb 8;20(1):28. doi: 10.1186/s13059-019-1635-1. Genome Biol. 2019. PMID: 30736820 Free PMC article.
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.
Gelali E, Girelli G, Matsumoto M, Wernersson E, Custodio J, Mota A, Schweitzer M, Ferenc K, Li X, Mirzazadeh R, Agostini F, Schell JP, Lanner F, Crosetto N, Bienko M. Gelali E, et al. Among authors: mirzazadeh r. Nat Commun. 2019 Apr 9;10(1):1636. doi: 10.1038/s41467-019-09616-w. Nat Commun. 2019. PMID: 30967549 Free PMC article.
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.
Zhang X, Garnerone S, Simonetti M, Harbers L, Nicoś M, Mirzazadeh R, Venesio T, Sapino A, Hartman J, Marchiò C, Bienko M, Crosetto N. Zhang X, et al. Among authors: mirzazadeh r. Nat Commun. 2019 Oct 18;10(1):4732. doi: 10.1038/s41467-019-12570-2. Nat Commun. 2019. PMID: 31628304 Free PMC article.
[No authors listed] [No authors listed] PMID: 31924875
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.
Wu C, Simonetti M, Rossell C, Mignardi M, Mirzazadeh R, Annaratone L, Marchiò C, Sapino A, Bienko M, Crosetto N, Nilsson M. Wu C, et al. Among authors: mirzazadeh r. Commun Biol. 2018 Nov 28;1:209. doi: 10.1038/s42003-018-0218-0. eCollection 2018. Commun Biol. 2018. PMID: 30511022 Free PMC article.
Novel N,N-dimethylbarbituric-pyridinium derivatives as potent urease inhibitors: Synthesis, in vitro, and in silico studies.
Biglar M, Mirzazadeh R, Asadi M, Sepehri S, Valizadeh Y, Sarrafi Y, Amanlou M, Larijani B, Mohammadi-Khanaposhtani M, Mahdavi M. Biglar M, et al. Among authors: mirzazadeh r. Bioorg Chem. 2020 Jan;95:103529. doi: 10.1016/j.bioorg.2019.103529. Epub 2019 Dec 20. Bioorg Chem. 2020. PMID: 31884139
Design, Synthesis, Molecular Docking, and Cholinesterase Inhibitory Potential of Phthalimide-Dithiocarbamate Hybrids as New Agents for Treatment of Alzheimer's Disease.
Asadi M, Ebrahimi M, Mohammadi-Khanaposhtani M, Azizian H, Sepehri S, Nadri H, Biglar M, Amanlou M, Larijani B, Mirzazadeh R, Edraki N, Mahdavi M. Asadi M, et al. Among authors: mirzazadeh r. Chem Biodivers. 2019 Nov;16(11):e1900370. doi: 10.1002/cbdv.201900370. Epub 2019 Oct 7. Chem Biodivers. 2019. PMID: 31523926
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