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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
Katoh K, Misawa K, Kuma K, Miyata T. Katoh K, et al. Nucleic Acids Res. 2002 Jul 15;30(14):3059-66. doi: 10.1093/nar/gkf436. Nucleic Acids Res. 2002. PMID: 12136088 Free PMC article.
FFT-NS-i is over 100 times faster than T-COFFEE, when the number of input sequences exceeds 60, without sacrificing the accuracy....
FFT-NS-i is over 100 times faster than T-COFFEE, when the number of input sequences exceeds 60, without sacrificing the accuracy....
Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.
Katoh K, Kuma K, Miyata T. Katoh K, et al. J Mol Evol. 2001 Oct-Nov;53(4-5):477-84. doi: 10.1007/s002390010238. J Mol Evol. 2001. PMID: 11675608
MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K, Kuma K, Toh H, Miyata T. Katoh K, et al. Nucleic Acids Res. 2005 Jan 20;33(2):511-8. doi: 10.1093/nar/gki198. Print 2005. Nucleic Acids Res. 2005. PMID: 15661851 Free PMC article.
cDNA cloning and regional distribution of a novel member of the opioid receptor family.
Fukuda K, Kato S, Mori K, Nishi M, Takeshima H, Iwabe N, Miyata T, Houtani T, Sugimoto T. Fukuda K, et al. FEBS Lett. 1994 Apr 18;343(1):42-6. doi: 10.1016/0014-5793(94)80603-9. FEBS Lett. 1994. PMID: 8163014
[Cambrian explosion and diversification of genes].
Suga H, Hoshiyama D, Miyata T. Suga H, et al. Tanpakushitsu Kakusan Koso. 1999 Mar;44(3):207-16. Tanpakushitsu Kakusan Koso. 1999. PMID: 10097652 Review. Japanese. No abstract available.
[Molecular evolution of voltage-gated ion channels].
Iwabe N, Miyata T. Iwabe N, et al. Tanpakushitsu Kakusan Koso. 1995 Nov;40(15):2311-8. Tanpakushitsu Kakusan Koso. 1995. PMID: 8532890 Review. Japanese. No abstract available.
Counterion displacement in the molecular evolution of the rhodopsin family.
Terakita A, Koyanagi M, Tsukamoto H, Yamashita T, Miyata T, Shichida Y. Terakita A, et al. Nat Struct Mol Biol. 2004 Mar;11(3):284-9. doi: 10.1038/nsmb731. Epub 2004 Feb 8. Nat Struct Mol Biol. 2004. PMID: 14981504
An estimate of divergence time of Parazoa and Eumetazoa and that of Cephalochordata and Vertebrata by aldolase and triose phosphate isomerase clocks.
Nikoh N, Iwabe N, Kuma K, Ohno M, Sugiyama T, Watanabe Y, Yasui K, Shi-cui Z, Hori K, Shimura Y, Miyata T. Nikoh N, et al. J Mol Evol. 1997 Jul;45(1):97-106. doi: 10.1007/pl00006208. J Mol Evol. 1997. PMID: 9211740
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