Mjolsness ED - Search Results

1

Application of a generalized MWC model for the mathematical simulation of metabolic pathways regulated by allosteric enzymes.

Najdi TS, Yang CR, Shapiro BE, Hatfield GW, Mjolsness ED. Najdi TS, et al. Among authors: mjolsness ed. J Bioinform Comput Biol. 2006 Apr;4(2):335-55. doi: 10.1142/s0219720006001862. J Bioinform Comput Biol. 2006. PMID: 16819787

2

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: mjolsness ed. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808

3

Connectivity in the yeast cell cycle transcription network: inferences from neural networks.

Hart CE, Mjolsness E, Wold BJ. Hart CE, et al. PLoS Comput Biol. 2006 Dec 22;2(12):e169. doi: 10.1371/journal.pcbi.0020169. Epub 2006 Oct 30. PLoS Comput Biol. 2006. PMID: 17194216 Free PMC article.

4

Pycellerator: an arrow-based reaction-like modelling language for biological simulations.

Shapiro BE, Mjolsness E. Shapiro BE, et al. Bioinformatics. 2016 Feb 15;32(4):629-31. doi: 10.1093/bioinformatics/btv596. Epub 2015 Oct 26. Bioinformatics. 2016. PMID: 26504142 Free PMC article.

5

Model reduction for stochastic CaMKII reaction kinetics in synapses by graph-constrained correlation dynamics.

Johnson T, Bartol T, Sejnowski T, Mjolsness E. Johnson T, et al. Phys Biol. 2015 Jun 18;12(4):045005. doi: 10.1088/1478-3975/12/4/045005. Phys Biol. 2015. PMID: 26086598 Free PMC article.

6

Time-ordered product expansions for computational stochastic system biology.

Mjolsness E. Mjolsness E. Phys Biol. 2013 Jun;10(3):035009. doi: 10.1088/1478-3975/10/3/035009. Epub 2013 Jun 4. Phys Biol. 2013. PMID: 23735739 Free PMC article.

7

Mathematics of small stochastic reaction networks: a boundary layer theory for eigenstate analysis.

Mjolsness E, Prasad U. Mjolsness E, et al. J Chem Phys. 2013 Mar 14;138(10):104111. doi: 10.1063/1.4794128. J Chem Phys. 2013. PMID: 23514469 Free PMC article.

8

A scalable and integrative system for pathway bioinformatics and systems biology.

Compani B, Su T, Chang I, Cheng J, Shah KH, Whisenant T, Dou Y, Bergmann A, Cheong R, Wold B, Bardwell L, Levchenko A, Baldi P, Mjolsness E. Compani B, et al. Adv Exp Med Biol. 2010;680:523-34. doi: 10.1007/978-1-4419-5913-3_58. Adv Exp Med Biol. 2010. PMID: 20865537 Free PMC article.

9

An exact accelerated stochastic simulation algorithm.

Mjolsness E, Orendorff D, Chatelain P, Koumoutsakos P. Mjolsness E, et al. J Chem Phys. 2009 Apr 14;130(14):144110. doi: 10.1063/1.3078490. J Chem Phys. 2009. PMID: 19368432 Free PMC article.

10

On cooperative quasi-equilibrium models of transcriptional regulation.

Mjolsness E. Mjolsness E. J Bioinform Comput Biol. 2007 Apr;5(2B):467-90. doi: 10.1142/s0219720007002874. J Bioinform Comput Biol. 2007. PMID: 17636856

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