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Client-server environment for high-performance gene expression data analysis.
Sturn A, Mlecnik B, Pieler R, Rainer J, Truskaller T, Trajanoski Z. Sturn A, et al. Bioinformatics. 2003 Apr 12;19(6):772-3. doi: 10.1093/bioinformatics/btg074. Bioinformatics. 2003. PMID: 12691990
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, Fridman WH, Pagès F, Trajanoski Z, Galon J. Bindea G, et al. Bioinformatics. 2009 Apr 15;25(8):1091-3. doi: 10.1093/bioinformatics/btp101. Epub 2009 Feb 23. Bioinformatics. 2009. PMID: 19237447 Free PMC article.
Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.
Bindea G, Mlecnik B, Tosolini M, Kirilovsky A, Waldner M, Obenauf AC, Angell H, Fredriksen T, Lafontaine L, Berger A, Bruneval P, Fridman WH, Becker C, Pagès F, Speicher MR, Trajanoski Z, Galon J. Bindea G, et al. Immunity. 2013 Oct 17;39(4):782-95. doi: 10.1016/j.immuni.2013.10.003. Immunity. 2013. PMID: 24138885
The number of B cells, which are key players in the core immune network and are associated with prolonged survival, increased at a late stage and showed a dual effect on recurrence and tumor progression. ...Genomic instability of the chemokine CXCL13 was a mechanism associ …
The number of B cells, which are key players in the core immune network and are associated with prolonged survival, increased at a la …
The tumor microenvironment and Immunoscore are critical determinants of dissemination to distant metastasis.
Mlecnik B, Bindea G, Kirilovsky A, Angell HK, Obenauf AC, Tosolini M, Church SE, Maby P, Vasaturo A, Angelova M, Fredriksen T, Mauger S, Waldner M, Berger A, Speicher MR, Pagès F, Valge-Archer V, Galon J. Mlecnik B, et al. Sci Transl Med. 2016 Feb 24;8(327):327ra26. doi: 10.1126/scitranslmed.aad6352. Sci Transl Med. 2016. PMID: 26912905
Comprehensive functional analysis of large lists of genes and proteins.
Mlecnik B, Galon J, Bindea G. Mlecnik B, et al. J Proteomics. 2018 Jan 16;171:2-10. doi: 10.1016/j.jprot.2017.03.016. Epub 2017 Mar 22. J Proteomics. 2018. PMID: 28343001
The Link between the Multiverse of Immune Microenvironments in Metastases and the Survival of Colorectal Cancer Patients.
Van den Eynde M, Mlecnik B, Bindea G, Fredriksen T, Church SE, Lafontaine L, Haicheur N, Marliot F, Angelova M, Vasaturo A, Bruni D, Jouret-Mourin A, Baldin P, Huyghe N, Haustermans K, Debucquoy A, Van Cutsem E, Gigot JF, Hubert C, Kartheuser A, Remue C, Léonard D, Valge-Archer V, Pagès F, Machiels JP, Galon J. Van den Eynde M, et al. Among authors: mlecnik b. Cancer Cell. 2018 Dec 10;34(6):1012-1026.e3. doi: 10.1016/j.ccell.2018.11.003. Cancer Cell. 2018. PMID: 30537506 Free article.
Automated exploration of gene ontology term and pathway networks with ClueGO-REST.
Mlecnik B, Galon J, Bindea G. Mlecnik B, et al. Bioinformatics. 2019 Oct 1;35(19):3864-3866. doi: 10.1093/bioinformatics/btz163. Bioinformatics. 2019. PMID: 30847467 Free PMC article.
Contribution of Immunoscore and Molecular Features to Survival Prediction in Stage III Colon Cancer.
Sinicrope FA, Shi Q, Hermitte F, Zemla TJ, Mlecnik B, Benson AB, Gill S, Goldberg RM, Kahlenberg MS, Nair SG, Shields AF, Smyrk TC, Galon J, Alberts SR. Sinicrope FA, et al. Among authors: mlecnik b. JNCI Cancer Spectr. 2020 Apr 5;4(3):pkaa023. doi: 10.1093/jncics/pkaa023. eCollection 2020 Jun. JNCI Cancer Spectr. 2020. PMID: 32455336 Free PMC article.
A Diagnostic Biopsy-Adapted Immunoscore Predicts Response to Neoadjuvant Treatment and Selects Patients with Rectal Cancer Eligible for a Watch-and-Wait Strategy.
El Sissy C, Kirilovsky A, Van den Eynde M, Muşină AM, Anitei MG, Romero A, Marliot F, Junca A, Doyen J, Mlecnik B, Haicheur N, Fredriksen T, Lagorce C, Jouret-Mourin A, Leonard D, Bibeau F, Iseas S, Roca EL, Cabanne AM, Vaccaro CA, Santino JP, Huertas E, Tougeron D, Carvalho C, Figueiredo N, Perez RO, Habr-Gama A, Scripcariu V, Gerard JP, Galon J, Zeitoun G, Pagès F. El Sissy C, et al. Among authors: mlecnik b. Clin Cancer Res. 2020 Jul 15. doi: 10.1158/1078-0432.CCR-20-0337. Online ahead of print. Clin Cancer Res. 2020. PMID: 32669377 Free article.
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