Mohiyuddin M - Search Results

1

An ensemble approach to accurately detect somatic mutations using SomaticSeq.

Fang LT, Afshar PT, Chhibber A, Mohiyuddin M, Fan Y, Mu JC, Gibeling G, Barr S, Asadi NB, Gerstein MB, Koboldt DC, Wang W, Wong WH, Lam HY. Fang LT, et al. Among authors: mohiyuddin m. Genome Biol. 2015 Sep 17;16(1):197. doi: 10.1186/s13059-015-0758-2. Genome Biol. 2015. PMID: 26381235 Free PMC article.

2

Fast and accurate read alignment for resequencing.

Mu JC, Jiang H, Kiani A, Mohiyuddin M, Bani Asadi N, Wong WH. Mu JC, et al. Among authors: mohiyuddin m. Bioinformatics. 2012 Sep 15;28(18):2366-73. doi: 10.1093/bioinformatics/bts450. Epub 2012 Jul 18. Bioinformatics. 2012. PMID: 22811546 Free PMC article.

3

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.

Mu JC, Mohiyuddin M, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. Mu JC, et al. Among authors: mohiyuddin m. Bioinformatics. 2015 May 1;31(9):1469-71. doi: 10.1093/bioinformatics/btu828. Epub 2014 Dec 17. Bioinformatics. 2015. PMID: 25524895 Free PMC article.

4

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.

Mohiyuddin M, Mu JC, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. Mohiyuddin M, et al. Bioinformatics. 2015 Aug 15;31(16):2741-4. doi: 10.1093/bioinformatics/btv204. Epub 2015 Apr 10. Bioinformatics. 2015. PMID: 25861968 Free PMC article.

5

Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.

Abyzov A, Li S, Kim DR, Mohiyuddin M, Stütz AM, Parrish NF, Mu XJ, Clark W, Chen K, Hurles M, Korbel JO, Lam HY, Lee C, Gerstein MB. Abyzov A, et al. Among authors: mohiyuddin m. Nat Commun. 2015 Jun 1;6:7256. doi: 10.1038/ncomms8256. Nat Commun. 2015. PMID: 26028266 Free PMC article.

6

Erratum: analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.

Abyzov A, Li S, Kim DR, Mohiyuddin M, Stütz AM, Parrish NF, Mu XJ, Clark W, Chen K, Hurles M, Korbel JO, Lam HY, Lee C, Gerstein MB. Abyzov A, et al. Among authors: mohiyuddin m. Nat Commun. 2015 Sep 8;6:8389. doi: 10.1038/ncomms9389. Nat Commun. 2015. PMID: 26346554 Free article. No abstract available.

7

Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods.

Mu JC, Tootoonchi Afshar P, Mohiyuddin M, Chen X, Li J, Bani Asadi N, Gerstein MB, Wong WH, Lam HY. Mu JC, et al. Among authors: mohiyuddin m. Sci Rep. 2015 Sep 28;5:14493. doi: 10.1038/srep14493. Sci Rep. 2015. PMID: 26412485 Free PMC article.

8

svclassify: a method to establish benchmark structural variant calls.

Parikh H, Mohiyuddin M, Lam HY, Iyer H, Chen D, Pratt M, Bartha G, Spies N, Losert W, Zook JM, Salit M. Parikh H, et al. Among authors: mohiyuddin m. BMC Genomics. 2016 Jan 16;17:64. doi: 10.1186/s12864-016-2366-2. BMC Genomics. 2016. PMID: 26772178 Free PMC article.

9

LongISLND: in silico sequencing of lengthy and noisy datatypes.

Lau B, Mohiyuddin M, Mu JC, Fang LT, Bani Asadi N, Dallett C, Lam HY. Lau B, et al. Among authors: mohiyuddin m. Bioinformatics. 2016 Dec 15;32(24):3829-3832. doi: 10.1093/bioinformatics/btw602. Epub 2016 Sep 25. Bioinformatics. 2016. PMID: 27667791 Free PMC article.

10

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis.

Sahraeian SME, Mohiyuddin M, Sebra R, Tilgner H, Afshar PT, Au KF, Bani Asadi N, Gerstein MB, Wong WH, Snyder MP, Schadt E, Lam HYK. Sahraeian SME, et al. Among authors: mohiyuddin m. Nat Commun. 2017 Jul 5;8(1):59. doi: 10.1038/s41467-017-00050-4. Nat Commun. 2017. PMID: 28680106 Free PMC article.

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