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Page 1
Fatal human H3N8 influenza virus has a moderate pandemic risk.
Le Sage V, Vu MN, Maltepes MA, Wang S, Snow BA, Merrbach GA, Benton AJ, Zirckel KE, Petnuch SE, Marble CN, Rigatti LH, Paulson JC, Drapeau EM, McElroy AK, Hensley SE, Moncla LH, Lakdawala SS. Le Sage V, et al. Among authors: moncla lh. PLoS Pathog. 2026 Mar 3;22(3):e1013586. doi: 10.1371/journal.ppat.1013586. Online ahead of print. PLoS Pathog. 2026. PMID: 41774777 Free article.
Emergence and epidemiology of dominant variants of human metapneumovirus in the United States between 2016 and 2021.
Pless LL, Damodaran L, Pomponio R, Patrick R, Griffith MP, Walters S, Waggle KD, Pleskovitch A, Rangachar Srinivasa V, Varela CA, Harrison LH, Barton JP, Moncla LH, Michaels MG, Williams JV, Wang-Erickson AF. Pless LL, et al. Among authors: moncla lh. mBio. 2026 Feb 11;17(2):e0261925. doi: 10.1128/mbio.02619-25. Epub 2026 Jan 12. mBio. 2026. PMID: 41524405 Free PMC article.
Fatal Human H3N8 Influenza Virus has a Moderate Pandemic Risk.
Le Sage V, Vu MN, Maltepes MA, Wang S, Snow BA, Merrbach GA, Benton AJ, Zirckel KE, Petnuch SE, Marble CN, Rigatti LH, Paulson JC, Drapeau EM, McElroy AK, Hensley SE, Moncla LH, Lakdawala SS. Le Sage V, et al. Among authors: moncla lh. bioRxiv [Preprint]. 2025 Oct 2:2025.10.02.679960. doi: 10.1101/2025.10.02.679960. bioRxiv. 2025. PMID: 41256369 Free PMC article. Preprint.
Ecology and spread of the North American H5N1 epizootic.
Damodaran L, Jaeger AS, Moncla LH. Damodaran L, et al. Among authors: moncla lh. Nature. 2026 Jan;649(8096):432-441. doi: 10.1038/s41586-025-09737-x. Epub 2025 Nov 12. Nature. 2026. PMID: 41225000 Free PMC article.
Emergence and Epidemiology of Dominant Variants of Human Metapneumovirus in the United States between 2016 and 2021.
Pless LL, Damodaran L, Pomponio R, Patrick R, Griffith MP, Walters S, Waggle KD, Pleskovitch A, Rangachar Srinivasa V, Varela CA, Harrison LH, Barton JP, Moncla LH, Michaels MG, Williams JV, Wang-Erickson AF. Pless LL, et al. Among authors: moncla lh. medRxiv [Preprint]. 2025 Sep 2:2025.08.31.25334797. doi: 10.1101/2025.08.31.25334797. medRxiv. 2025. Update in: mBio. 2026 Feb 11;17(2):e0261925. doi: 10.1128/mbio.02619-25. PMID: 40950449 Free PMC article. Updated. Preprint.
Controlling bird flu is urgent-for dairy, wildlife, poultry, pets, and people.
Lowen AC, Bowman AS, Runstadler JA, Baker AL, García-Sastre A, Hensley SE, Lakdawala SS, Moncla LH, Nelson M, Pekosz A, Poulson RL, Puryear WB, Sutton TC, Tompkins SM, Webby RJ. Lowen AC, et al. Among authors: moncla lh. J Am Vet Med Assoc. 2025 Jun 25;263(9):1192-1195. doi: 10.2460/javma.25.05.0294. Print 2025 Sep 1. J Am Vet Med Assoc. 2025. PMID: 40562366 Free article.
Influenza A(H5N1) Immune Response among Ferrets with Influenza A(H1N1)pdm09 Immunity.
Le Sage V, Werner BD, Merrbach GA, Petnuch SE, O'Connell AK, Simmons HC, McCarthy KR, Reed DS, Moncla LH, Bhavsar D, Krammer F, Crossland NA, McElroy AK, Duprex WP, Lakdawala SS. Le Sage V, et al. Among authors: moncla lh. Emerg Infect Dis. 2025 Mar;31(3):477-487. doi: 10.3201/eid3103.241485. Emerg Infect Dis. 2025. PMID: 40023796 Free PMC article.
Pandemic risk stemming from the bovine H5N1 outbreak: an account of the knowns and unknowns.
Lowen AC, Baker AL, Bowman AS, García-Sastre A, Hensley SE, Lakdawala SS, Moncla LH, Nelson MI, Pekosz A, Poulson RL, Puryear WB, Runstadler JA, Sutton TC, Tompkins SM, Webby RJ; Risk Assessment Pipeline working group of the NIAID Centers of Excellence for Influenza Research and Response (CEIRR) Network. Lowen AC, et al. Among authors: moncla lh. J Virol. 2025 Apr 15;99(4):e0005225. doi: 10.1128/jvi.00052-25. Epub 2025 Feb 27. J Virol. 2025. PMID: 40013775 Free PMC article. Review.
Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance.
Dadonaite B, Ahn JJ, Ort JT, Yu J, Furey C, Dosey A, Hannon WW, Vincent Baker AL, Webby RJ, King NP, Liu Y, Hensley SE, Peacock TP, Moncla LH, Bloom JD. Dadonaite B, et al. Among authors: moncla lh. PLoS Biol. 2024 Nov 12;22(11):e3002916. doi: 10.1371/journal.pbio.3002916. eCollection 2024 Nov. PLoS Biol. 2024. PMID: 39531474 Free PMC article.
Pre-existing H1N1 immunity reduces severe disease with bovine H5N1 influenza virus.
Le Sage V, Werner BD, Merrbach GA, Petnuch SE, O'Connell AK, Simmons HC, McCarthy KR, Reed DS, Moncla LH, Bhavsar D, Krammer F, Crossland NA, McElroy AK, Duprex WP, Lakdawala SS. Le Sage V, et al. Among authors: moncla lh. bioRxiv [Preprint]. 2024 Oct 23:2024.10.23.619881. doi: 10.1101/2024.10.23.619881. bioRxiv. 2024. PMID: 39484442 Free PMC article. Preprint.
Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance.
Dadonaite B, Ahn JJ, Ort JT, Yu J, Furey C, Dosey A, Hannon WW, Baker AV, Webby RJ, King NP, Liu Y, Hensley SE, Peacock TP, Moncla LH, Bloom JD. Dadonaite B, et al. Among authors: moncla lh. bioRxiv [Preprint]. 2024 Jul 31:2024.05.23.595634. doi: 10.1101/2024.05.23.595634. bioRxiv. 2024. Update in: PLoS Biol. 2024 Nov 12;22(11):e3002916. doi: 10.1371/journal.pbio.3002916. PMID: 38826368 Free PMC article. Updated. Preprint.
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Bakhash SAM, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: moncla lh. PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38530853 Free PMC article.
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients.
Marques AD, Graham-Wooten J, Fitzgerald AS, Sobel Leonard A, Cook EJ, Everett JK, Rodino KG, Moncla LH, Kelly BJ, Collman RG, Bushman FD. Marques AD, et al. Among authors: moncla lh. mBio. 2024 Mar 13;15(3):e0011024. doi: 10.1128/mbio.00110-24. Epub 2024 Feb 16. mBio. 2024. PMID: 38364100 Free PMC article.
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Mohamed Bakhash SA, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: moncla lh. medRxiv [Preprint]. 2022 Dec 16:2022.12.15.22283536. doi: 10.1101/2022.12.15.22283536. medRxiv. 2022. Update in: PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. PMID: 36561171 Free PMC article. Updated. Preprint.
A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes.
Arevalo CP, Bolton MJ, Le Sage V, Ye N, Furey C, Muramatsu H, Alameh MG, Pardi N, Drapeau EM, Parkhouse K, Garretson T, Morris JS, Moncla LH, Tam YK, Fan SHY, Lakdawala SS, Weissman D, Hensley SE. Arevalo CP, et al. Among authors: moncla lh. Science. 2022 Nov 25;378(6622):899-904. doi: 10.1126/science.abm0271. Epub 2022 Nov 24. Science. 2022. PMID: 36423275 Free PMC article.
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.
Müller NF, Wagner C, Frazar CD, Roychoudhury P, Lee J, Moncla LH, Pelle B, Richardson M, Ryke E, Xie H, Shrestha L, Addetia A, Rachleff VM, Lieberman NAP, Huang ML, Gautom R, Melly G, Hiatt B, Dykema P, Adler A, Brandstetter E, Han PD, Fay K, Ilcisin M, Lacombe K, Sibley TR, Truong M, Wolf CR, Boeckh M, Englund JA, Famulare M, Lutz BR, Rieder MJ, Thompson M, Duchin JS, Starita LM, Chu HY, Shendure J, Jerome KR, Lindquist S, Greninger AL, Nickerson DA, Bedford T. Müller NF, et al. Among authors: moncla lh. Sci Transl Med. 2021 May 26;13(595):eabf0202. doi: 10.1126/scitranslmed.abf0202. Epub 2021 May 3. Sci Transl Med. 2021. PMID: 33941621 Free PMC article.
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.
Müller NF, Wagner C, Frazar CD, Roychoudhury P, Lee J, Moncla LH, Pelle B, Richardson M, Ryke E, Xie H, Shrestha L, Addetia A, Rachleff VM, Lieberman NAP, Huang ML, Gautom R, Melly G, Hiatt B, Dykema P, Adler A, Brandstetter E, Han PD, Fay K, Llcisin M, Lacombe K, Sibley TR, Truong M, Wolf CR, Boeckh M, Englund JA, Famulare M, Lutz BR, Rieder MJ, Thompson M, Duchin JS, Starita LM, Chu HY, Shendure J, Jerome KR, Lindquist S, Greninger AL, Nickerson DA, Bedford T. Müller NF, et al. Among authors: moncla lh. medRxiv [Preprint]. 2020 Sep 30:2020.09.30.20204230. doi: 10.1101/2020.09.30.20204230. medRxiv. 2020. Update in: Sci Transl Med. 2021 May 26;13(595):eabf0202. doi: 10.1126/scitranslmed.abf0202. PMID: 33024981 Free PMC article. Updated. Preprint.
Cryptic transmission of SARS-CoV-2 in Washington state.
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, Giroux D, Han PD, Fay K, Frazar CD, Ilcisin M, Lacombe K, Lee J, Kiavand A, Richardson M, Sibley TR, Truong M, Wolf CR, Nickerson DA, Rieder MJ, Englund JA; Seattle Flu Study Investigators; Hadfield J, Hodcroft EB, Huddleston J, Moncla LH, Müller NF, Neher RA, Deng X, Gu W, Federman S, Chiu C, Duchin JS, Gautom R, Melly G, Hiatt B, Dykema P, Lindquist S, Queen K, Tao Y, Uehara A, Tong S, MacCannell D, Armstrong GL, Baird GS, Chu HY, Shendure J, Jerome KR. Bedford T, et al. Among authors: moncla lh. Science. 2020 Oct 30;370(6516):571-575. doi: 10.1126/science.abc0523. Epub 2020 Sep 10. Science. 2020. PMID: 32913002 Free PMC article.
Cryptic transmission of SARS-CoV-2 in Washington State.
Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Huang ML, Nalla A, Pepper G, Reinhardt A, Xie H, Shrestha L, Nguyen TN, Adler A, Brandstetter E, Cho S, Giroux D, Han PD, Fay K, Frazar CD, Ilcisin M, Lacombe K, Lee J, Kiavand A, Richardson M, Sibley TR, Truong M, Wolf CR, Nickerson DA, Rieder MJ, Englund JA; Seattle Flu Study Investigators; Hadfield J, Hodcroft EB, Huddleston J, Moncla LH, Müller NF, Neher RA, Deng X, Gu W, Federman S, Chiu C, Duchin J, Gautom R, Melly G, Hiatt B, Dykema P, Lindquist S, Queen K, Tao Y, Uehara A, Tong S, MacCannell D, Armstrong GL, Baird GS, Chu HY, Shendure J, Jerome KR. Bedford T, et al. Among authors: moncla lh. medRxiv [Preprint]. 2020 Apr 6:2020.04.02.20051417. doi: 10.1101/2020.04.02.20051417. medRxiv. 2020. Update in: Science. 2020 Oct 30;370(6516):571-575. doi: 10.1126/science.abc0523. PMID: 32511596 Free PMC article. Updated. Preprint.
Diversity of Influenza A(H5N1) Viruses in Infected Humans, Northern Vietnam, 2004-2010.
Imai H, Dinis JM, Zhong G, Moncla LH, Lopes TJS, McBride R, Thompson AJ, Peng W, Le MTQ, Hanson A, Lauck M, Sakai-Tagawa Y, Yamada S, Eggenberger J, O'Connor DH, Suzuki Y, Hatta M, Paulson JC, Neumann G, Friedrich TC, Kawaoka Y. Imai H, et al. Among authors: moncla lh. Emerg Infect Dis. 2018 Jul;24(7):1128-1238. doi: 10.3201/eid2407.171441. Emerg Infect Dis. 2018. PMID: 29912683 Free PMC article.
Within-Host Evolution of Human Influenza Virus.
Xue KS, Moncla LH, Bedford T, Bloom JD. Xue KS, et al. Among authors: moncla lh. Trends Microbiol. 2018 Sep;26(9):781-793. doi: 10.1016/j.tim.2018.02.007. Epub 2018 Mar 10. Trends Microbiol. 2018. PMID: 29534854 Free PMC article. Review.
Emergence of Oseltamivir-Resistant H7N9 Influenza Viruses in Immunosuppressed Cynomolgus Macaques.
Kiso M, Iwatsuki-Horimoto K, Yamayoshi S, Uraki R, Ito M, Nakajima N, Yamada S, Imai M, Kawakami E, Tomita Y, Fukuyama S, Itoh Y, Ogasawara K, Lopes TJS, Watanabe T, Moncla LH, Hasegawa H, Friedrich TC, Neumann G, Kawaoka Y. Kiso M, et al. Among authors: moncla lh. J Infect Dis. 2017 Sep 1;216(5):582-593. doi: 10.1093/infdis/jix296. J Infect Dis. 2017. PMID: 28931216
Influenza Evolution: New Insights into an Old Foe.
Moncla LH, Florek KR, Friedrich TC. Moncla LH, et al. Trends Microbiol. 2017 Jun;25(6):432-434. doi: 10.1016/j.tim.2017.04.003. Epub 2017 May 3. Trends Microbiol. 2017. PMID: 28478941
Within-Host Evolution of Simian Arteriviruses in Crab-Eating Macaques.
Moncla LH, Weiler AM, Barry G, Weinfurter JT, Dinis JM, Charlier O, Lauck M, Bailey AL, Wahl-Jensen V, Nelson CW, Johnson JC, Caì Y, Goldberg TL, O'Connor DH, Jahrling PB, Kuhn JH, Friedrich TC. Moncla LH, et al. J Virol. 2017 Jan 31;91(4):e02231-16. doi: 10.1128/JVI.02231-16. Print 2017 Feb 15. J Virol. 2017. PMID: 27974564 Free PMC article.
A rhesus macaque model of Asian-lineage Zika virus infection.
Dudley DM, Aliota MT, Mohr EL, Weiler AM, Lehrer-Brey G, Weisgrau KL, Mohns MS, Breitbach ME, Rasheed MN, Newman CM, Gellerup DD, Moncla LH, Post J, Schultz-Darken N, Schotzko ML, Hayes JM, Eudailey JA, Moody MA, Permar SR, O'Connor SL, Rakasz EG, Simmons HA, Capuano S, Golos TG, Osorio JE, Friedrich TC, O'Connor DH. Dudley DM, et al. Among authors: moncla lh. Nat Commun. 2016 Jun 28;7:12204. doi: 10.1038/ncomms12204. Nat Commun. 2016. PMID: 27352279 Free PMC article.
Divergent Simian Arteriviruses Cause Simian Hemorrhagic Fever of Differing Severities in Macaques.
Wahl-Jensen V, Johnson JC, Lauck M, Weinfurter JT, Moncla LH, Weiler AM, Charlier O, Rojas O, Byrum R, Ragland DR, Huzella L, Zommer E, Cohen M, Bernbaum JG, Caì Y, Sanford HB, Mazur S, Johnson RF, Qin J, Palacios GF, Bailey AL, Jahrling PB, Goldberg TL, O'Connor DH, Friedrich TC, Kuhn JH. Wahl-Jensen V, et al. Among authors: moncla lh. mBio. 2016 Feb 23;7(1):e02009-15. doi: 10.1128/mBio.02009-15. mBio. 2016. PMID: 26908578 Free PMC article.
A novel nonhuman primate model for influenza transmission.
Moncla LH, Ross TM, Dinis JM, Weinfurter JT, Mortimer TD, Schultz-Darken N, Brunner K, Capuano SV 3rd, Boettcher C, Post J, Johnson M, Bloom CE, Weiler AM, Friedrich TC. Moncla LH, et al. PLoS One. 2013 Nov 14;8(11):e78750. doi: 10.1371/journal.pone.0078750. eCollection 2013. PLoS One. 2013. PMID: 24244352 Free PMC article.