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Logic modeling and the ridiculome under the rug.
Blinov ML, Moraru II. Blinov ML, et al. Among authors: moraru ii. BMC Biol. 2012 Nov 21;10:92. doi: 10.1186/1741-7007-10-92. BMC Biol. 2012. PMID: 23171629 Free PMC article.
Rule-based modeling with Virtual Cell.
Schaff JC, Vasilescu D, Moraru II, Loew LM, Blinov ML. Schaff JC, et al. Among authors: moraru ii. Bioinformatics. 2016 Sep 15;32(18):2880-2. doi: 10.1093/bioinformatics/btw353. Epub 2016 Jun 9. Bioinformatics. 2016. PMID: 27497444 Free PMC article.
Spatial modeling of cell signaling networks.
Cowan AE, Moraru II, Schaff JC, Slepchenko BM, Loew LM. Cowan AE, et al. Among authors: moraru ii. Methods Cell Biol. 2012;110:195-221. doi: 10.1016/B978-0-12-388403-9.00008-4. Methods Cell Biol. 2012. PMID: 22482950 Free PMC article.
Compartmental and Spatial Rule-Based Modeling with Virtual Cell.
Blinov ML, Schaff JC, Vasilescu D, Moraru II, Bloom JE, Loew LM. Blinov ML, et al. Among authors: moraru ii. Biophys J. 2017 Oct 3;113(7):1365-1372. doi: 10.1016/j.bpj.2017.08.022. Biophys J. 2017. PMID: 28978431 Free PMC article.
Pathway Commons at virtual cell: use of pathway data for mathematical modeling.
Blinov ML, Schaff JC, Ruebenacker O, Wei X, Vasilescu D, Gao F, Morgan F, Ye L, Lakshminarayana A, Moraru II, Loew LM. Blinov ML, et al. Among authors: moraru ii. Bioinformatics. 2014 Jan 15;30(2):292-4. doi: 10.1093/bioinformatics/btt660. Epub 2013 Nov 22. Bioinformatics. 2014. PMID: 24273241 Free PMC article.
Kinetic Modeling using BioPAX ontology.
Ruebenacker O, Moraru II, Schaff JC, Blinov ML. Ruebenacker O, et al. Among authors: moraru ii. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2007 Nov 2;2007:339-348. doi: 10.1109/BIBM.2007.55. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2007. PMID: 20862270 Free PMC article.
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