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Software for computing and annotating genomic ranges.
Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, Gentleman R, Morgan MT, Carey VJ. Lawrence M, et al. Among authors: morgan mt. PLoS Comput Biol. 2013;9(8):e1003118. doi: 10.1371/journal.pcbi.1003118. Epub 2013 Aug 8. PLoS Comput Biol. 2013. PMID: 23950696 Free PMC article.
Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Public data and open source tools for multi-assay genomic investigation of disease.
Kannan L, Ramos M, Re A, El-Hachem N, Safikhani Z, Gendoo DM, Davis S, Gomez-Cabrero D, Castelo R, Hansen KD, Carey VJ, Morgan M, Culhane AC, Haibe-Kains B, Waldron L. Kannan L, et al. Brief Bioinform. 2016 Jul;17(4):603-15. doi: 10.1093/bib/bbv080. Epub 2015 Oct 12. Brief Bioinform. 2016. PMID: 26463000 Free PMC article. Review.
The Bioconductor channel in F1000Research.
Huber W, Carey V, Davis S, Hansen KD, Morgan M. Huber W, et al. F1000Res. 2015 Jul 10;4:217. doi: 10.12688/f1000research.6758.2. eCollection 2015. F1000Res. 2015. PMID: 26998224 Free PMC article.
Genomic Annotation Resources in R/Bioconductor.
Carlson MR, Pagès H, Arora S, Obenchain V, Morgan M. Carlson MR, et al. Methods Mol Biol. 2016;1418:67-90. doi: 10.1007/978-1-4939-3578-9_4. Methods Mol Biol. 2016. PMID: 27008010
Scalable Genomics with R and Bioconductor.
Lawrence M, Morgan M. Lawrence M, et al. Stat Sci. 2014 May;29(2):214-226. doi: 10.1214/14-STS476. Epub 2014 Aug 18. Stat Sci. 2014. PMID: 28018047 Free PMC article.
148 results