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The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Among authors: Morgan XC. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes.
Yassour M, Lim MY, Yun HS, Tickle TL, Sung J, Song YM, Lee K, Franzosa EA, Morgan XC, Gevers D, Lander ES, Xavier RJ, Birren BW, Ko G, Huttenhower C. Yassour M, et al. Among authors: Morgan XC. Genome Med. 2016 Feb 17;8(1):17. doi: 10.1186/s13073-016-0271-6. Genome Med. 2016. PMID: 26884067 Free PMC article.
Functional profiling of the gut microbiome in disease-associated inflammation.
Börnigen D, Morgan XC, Franzosa EA, Ren B, Xavier RJ, Garrett WS, Huttenhower C. Börnigen D, et al. Among authors: Morgan XC. Genome Med. 2013 Jul 31;5(7):65. doi: 10.1186/gm469. eCollection 2013. Genome Med. 2013. PMID: 23906180 Free PMC article. Review.
Meta'omic analytic techniques for studying the intestinal microbiome.
Morgan XC, Huttenhower C. Morgan XC, et al. Gastroenterology. 2014 May;146(6):1437-1448.e1. doi: 10.1053/j.gastro.2014.01.049. Epub 2014 Jan 28. Gastroenterology. 2014. PMID: 24486053 Review.
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.
Franzosa EA, Hsu T, Sirota-Madi A, Shafquat A, Abu-Ali G, Morgan XC, Huttenhower C. Franzosa EA, et al. Among authors: Morgan XC. Nat Rev Microbiol. 2015 Jun;13(6):360-72. doi: 10.1038/nrmicro3451. Epub 2015 Apr 27. Nat Rev Microbiol. 2015. PMID: 25915636 Free PMC article. Review.
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease.
Morgan XC, Kabakchiev B, Waldron L, Tyler AD, Tickle TL, Milgrom R, Stempak JM, Gevers D, Xavier RJ, Silverberg MS, Huttenhower C. Morgan XC, et al. Genome Biol. 2015 Apr 8;16(1):67. doi: 10.1186/s13059-015-0637-x. Genome Biol. 2015. PMID: 25887922 Free PMC article.
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque.
Yasuda K, Oh K, Ren B, Tickle TL, Franzosa EA, Wachtman LM, Miller AD, Westmoreland SV, Mansfield KG, Vallender EJ, Miller GM, Rowlett JK, Gevers D, Huttenhower C, Morgan XC. Yasuda K, et al. Among authors: Morgan XC. Cell Host Microbe. 2015 Mar 11;17(3):385-391. doi: 10.1016/j.chom.2015.01.015. Epub 2015 Feb 26. Cell Host Microbe. 2015. PMID: 25732063 Free PMC article.
Relating the metatranscriptome and metagenome of the human gut.
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C. Franzosa EA, et al. Among authors: Morgan XC. Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2329-38. doi: 10.1073/pnas.1319284111. Epub 2014 May 19. Proc Natl Acad Sci U S A. 2014. PMID: 24843156 Free PMC article.
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