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AUGUSTUS: a web server for gene finding in eukaryotes.
Stanke M, Steinkamp R, Waack S, Morgenstern B. Stanke M, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12. doi: 10.1093/nar/gkh379. Nucleic Acids Res. 2004. PMID: 15215400 Free PMC article.
A space-efficient algorithm for aligning large genomic sequences.
Morgenstern B. Morgenstern B. Bioinformatics. 2000 Oct;16(10):948-9. doi: 10.1093/bioinformatics/16.10.948. Bioinformatics. 2000. PMID: 11120687
The HIB database of annotated UniGene clusters.
Geier B, Kastenmüller G, Fellenberg M, Mewes HW, Morgenstern B. Geier B, et al. Bioinformatics. 2001 Jun;17(6):571-2. doi: 10.1093/bioinformatics/17.6.571. Bioinformatics. 2001. PMID: 11395439
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.
Morgenstern B. Morgenstern B. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W33-6. doi: 10.1093/nar/gkh373. Nucleic Acids Res. 2004. PMID: 15215344 Free PMC article.
The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.
Brudno M, Steinkamp R, Morgenstern B. Brudno M, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W41-4. doi: 10.1093/nar/gkh361. Nucleic Acids Res. 2004. PMID: 15215346 Free PMC article.
AGenDA: gene prediction by cross-species sequence comparison.
Taher L, Rinner O, Garg S, Sczyrba A, Morgenstern B. Taher L, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W305-8. doi: 10.1093/nar/gkh386. Nucleic Acids Res. 2004. PMID: 15215399 Free PMC article.
Multiple sequence alignment with user-defined constraints at GOBICS.
Morgenstern B, Werner N, Prohaska SJ, Steinkamp R, Schneider I, Subramanian AR, Stadler PF, Weyer-Menkhoff J. Morgenstern B, et al. Bioinformatics. 2005 Apr 1;21(7):1271-3. doi: 10.1093/bioinformatics/bti142. Epub 2004 Nov 16. Bioinformatics. 2005. PMID: 15546937
Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.
Pöhler D, Werner N, Steinkamp R, Morgenstern B. Pöhler D, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W532-4. doi: 10.1093/nar/gki386. Nucleic Acids Res. 2005. PMID: 15980528 Free PMC article.
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