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Mining gene expression data by interpreting principal components.
Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE. Roden JC, et al. Among authors: mortazavi a. BMC Bioinformatics. 2006 Apr 7;7:194. doi: 10.1186/1471-2105-7-194. BMC Bioinformatics. 2006. PMID: 16600052 Free PMC article.
Computation for ChIP-seq and RNA-seq studies.
Pepke S, Wold B, Mortazavi A. Pepke S, et al. Among authors: mortazavi a. Nat Methods. 2009 Nov;6(11 Suppl):S22-32. doi: 10.1038/nmeth.1371. Nat Methods. 2009. PMID: 19844228 Free PMC article. Review.
Scaffolding a Caenorhabditis nematode genome with RNA-seq.
Mortazavi A, Schwarz EM, Williams B, Schaeffer L, Antoshechkin I, Wold BJ, Sternberg PW. Mortazavi A, et al. Genome Res. 2010 Dec;20(12):1740-7. doi: 10.1101/gr.111021.110. Epub 2010 Oct 27. Genome Res. 2010. PMID: 20980554 Free PMC article.
Landscape of transcription in human cells.
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, Giddings MC, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras TR. Djebali S, et al. Among authors: mortazavi a. Nature. 2012 Sep 6;489(7414):101-8. doi: 10.1038/nature11233. Nature. 2012. PMID: 22955620 Free PMC article.
RNA editing in the human ENCODE RNA-seq data.
Park E, Williams B, Wold BJ, Mortazavi A. Park E, et al. Among authors: mortazavi a. Genome Res. 2012 Sep;22(9):1626-33. doi: 10.1101/gr.134957.111. Genome Res. 2012. PMID: 22955975 Free PMC article.
237 results