Mose LE - Search Results

1

Improved indel detection in DNA and RNA via realignment with ABRA2.

Mose LE, Perou CM, Parker JS. Mose LE, et al. Bioinformatics. 2019 Sep 1;35(17):2966-2973. doi: 10.1093/bioinformatics/btz033. Bioinformatics. 2019. PMID: 30649250 Free PMC article.

2

ABRA: improved coding indel detection via assembly-based realignment.

Mose LE, Wilkerson MD, Hayes DN, Perou CM, Parker JS. Mose LE, et al. Bioinformatics. 2014 Oct;30(19):2813-5. doi: 10.1093/bioinformatics/btu376. Epub 2014 Jun 6. Bioinformatics. 2014. PMID: 24907369 Free PMC article.

3

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors.

Wilkerson MD, Cabanski CR, Sun W, Hoadley KA, Walter V, Mose LE, Troester MA, Hammerman PS, Parker JS, Perou CM, Hayes DN. Wilkerson MD, et al. Among authors: mose le. Nucleic Acids Res. 2014 Jul;42(13):e107. doi: 10.1093/nar/gku489. Epub 2014 Jun 26. Nucleic Acids Res. 2014. PMID: 24970867 Free PMC article.

4

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer.

Mose LE, Selitsky SR, Bixby LM, Marron DL, Iglesia MD, Serody JS, Perou CM, Vincent BG, Parker JS. Mose LE, et al. Bioinformatics. 2016 Dec 15;32(24):3729-3734. doi: 10.1093/bioinformatics/btw526. Epub 2016 Aug 24. Bioinformatics. 2016. PMID: 27559159 Free PMC article.

5

SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling.

Silva GO, Siegel MB, Mose LE, Parker JS, Sun W, Perou CM, Chen M. Silva GO, et al. Among authors: mose le. Genome Biol. 2017 Apr 8;18(1):66. doi: 10.1186/s13059-017-1193-3. Genome Biol. 2017. PMID: 28390427 Free PMC article.

6

Genetic determinants of cellular addiction to DNA polymerase theta.

Feng W, Simpson DA, Carvajal-Garcia J, Price BA, Kumar RJ, Mose LE, Wood RD, Rashid N, Purvis JE, Parker JS, Ramsden DA, Gupta GP. Feng W, et al. Among authors: mose le. Nat Commun. 2019 Sep 19;10(1):4286. doi: 10.1038/s41467-019-12234-1. Nat Commun. 2019. PMID: 31537809 Free PMC article.

7

Virus expression detection reveals RNA-sequencing contamination in TCGA.

Selitsky SR, Marron D, Hollern D, Mose LE, Hoadley KA, Jones C, Parker JS, Dittmer DP, Perou CM. Selitsky SR, et al. Among authors: mose le. BMC Genomics. 2020 Jan 28;21(1):79. doi: 10.1186/s12864-020-6483-6. BMC Genomics. 2020. PMID: 31992194 Free PMC article.

8

Rad18 mediates specific mutational signatures and shapes the genomic landscape of carcinogen-induced tumors in vivo.

Lou J, Yang Y, Gu Q, Price BA, Qiu Y, Fedoriw Y, Desai S, Mose LE, Chen B, Tateishi S, Parker JS, Vaziri C, Wu D. Lou J, et al. Among authors: mose le. NAR Cancer. 2021 Mar;3(1):zcaa037. doi: 10.1093/narcan/zcaa037. Epub 2021 Jan 6. NAR Cancer. 2021. PMID: 33447826 Free PMC article.

9

Prognostic value of B cells in cutaneous melanoma.

Selitsky SR, Mose LE, Smith CC, Chai S, Hoadley KA, Dittmer DP, Moschos SJ, Parker JS, Vincent BG. Selitsky SR, et al. Among authors: mose le. Genome Med. 2019 May 28;11(1):36. doi: 10.1186/s13073-019-0647-5. Genome Med. 2019. PMID: 31138334 Free PMC article.

10

Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality.

Selitsky SR, Marron D, Mose LE, Parker JS, Dittmer DP. Selitsky SR, et al. Among authors: mose le. mSystems. 2018 Sep 25;3(5):e00081-18. doi: 10.1128/mSystems.00081-18. eCollection 2018 Sep-Oct. mSystems. 2018. PMID: 30271878 Free PMC article.

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