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PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas.
Moustafa A, Bhattacharya D. Moustafa A, et al. BMC Evol Biol. 2008 Jan 15;8:6. doi: 10.1186/1471-2148-8-6. BMC Evol Biol. 2008. PMID: 18194581 Free PMC article.
Differential gene retention in plastids of common recent origin.
Reyes-Prieto A, Yoon HS, Moustafa A, Yang EC, Andersen RA, Boo SM, Nakayama T, Ishida K, Bhattacharya D. Reyes-Prieto A, et al. Among authors: moustafa a. Mol Biol Evol. 2010 Jul;27(7):1530-7. doi: 10.1093/molbev/msq032. Epub 2010 Feb 1. Mol Biol Evol. 2010. PMID: 20123796 Free PMC article.
Plastid-localized amino acid biosynthetic pathways of Plantae are predominantly composed of non-cyanobacterial enzymes.
Reyes-Prieto A, Moustafa A. Reyes-Prieto A, et al. Among authors: moustafa a. Sci Rep. 2012;2:955. doi: 10.1038/srep00955. Epub 2012 Dec 11. Sci Rep. 2012. PMID: 23233874 Free PMC article.
Genomic footprints of a cryptic plastid endosymbiosis in diatoms.
Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D. Moustafa A, et al. Science. 2009 Jun 26;324(5935):1724-6. doi: 10.1126/science.1172983. Science. 2009. PMID: 19556510
Origin of saxitoxin biosynthetic genes in cyanobacteria.
Moustafa A, Loram JE, Hackett JD, Anderson DM, Plumley FG, Bhattacharya D. Moustafa A, et al. PLoS One. 2009 Jun 1;4(6):e5758. doi: 10.1371/journal.pone.0005758. PLoS One. 2009. PMID: 19484122 Free PMC article.
A phylogenomic approach for studying plastid endosymbiosis.
Moustafa A, Chan CX, Danforth M, Zear D, Ahmed H, Jadhav N, Savage T, Bhattacharya D. Moustafa A, et al. Genome Inform. 2008;21:165-76. Genome Inform. 2008. PMID: 19425156
Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions.
Moustafa A, Reyes-Prieto A, Bhattacharya D. Moustafa A, et al. PLoS One. 2008 May 21;3(5):e2205. doi: 10.1371/journal.pone.0002205. PLoS One. 2008. PMID: 18493612 Free PMC article.
EST analysis of Ostreococcus lucimarinus, the most compact eukaryotic genome, shows an excess of introns in highly expressed genes.
Lanier W, Moustafa A, Bhattacharya D, Comeron JM. Lanier W, et al. Among authors: moustafa a. PLoS One. 2008 May 14;3(5):e2171. doi: 10.1371/journal.pone.0002171. PLoS One. 2008. PMID: 18478122 Free PMC article.
The making of a photosynthetic animal.
Rumpho ME, Pelletreau KN, Moustafa A, Bhattacharya D. Rumpho ME, et al. Among authors: moustafa a. J Exp Biol. 2011 Jan 15;214(Pt 2):303-11. doi: 10.1242/jeb.046540. J Exp Biol. 2011. PMID: 21177950 Free PMC article.
Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic.
Reyes-Prieto A, Moustafa A, Bhattacharya D. Reyes-Prieto A, et al. Among authors: moustafa a. Curr Biol. 2008 Jul 8;18(13):956-62. doi: 10.1016/j.cub.2008.05.042. Curr Biol. 2008. PMID: 18595706 Free PMC article.
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