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Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand EL, Pratt GA, Yee BA, Wheeler EC, Blue SM, Mueller J, Park SS, Garcia KE, Gelboin-Burkhart C, Nguyen TB, Rabano I, Stanton R, Sundararaman B, Wang R, Fu XD, Graveley BR, Yeo GW. Van Nostrand EL, et al. Among authors: mueller j. Genome Biol. 2020 Apr 6;21(1):90. doi: 10.1186/s13059-020-01982-9. Genome Biol. 2020. PMID: 32252787 Free PMC article.
Context-dependent functional compensation between Ythdf m6A reader proteins.
Lasman L, Krupalnik V, Viukov S, Mor N, Aguilera-Castrejon A, Schneir D, Bayerl J, Mizrahi O, Peles S, Tawil S, Sathe S, Nachshon A, Shani T, Zerbib M, Kilimnik I, Aigner S, Shankar A, Mueller JR, Schwartz S, Stern-Ginossar N, Yeo GW, Geula S, Novershtern N, Hanna JH. Lasman L, et al. Among authors: mueller jr. Genes Dev. 2020 Oct 1;34(19-20):1373-1391. doi: 10.1101/gad.340695.120. Epub 2020 Sep 17. Genes Dev. 2020. PMID: 32943573 Free PMC article.
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.
Xiang JS, Mueller JR, Luo EC, Yee BA, Schafer D, Schmok JC, Tan FE, Rothamel K, McVicar RN, Kwong EM, Jones KL, Her HL, Chen CY, Vu AQ, Jin W, Park SS, Le P, Brannan KW, Kofman ER, Li Y, Tankka AT, Dong KD, Song Y, Carlin AF, Van Nostrand EL, Leibel SL, Yeo GW. Xiang JS, et al. bioRxiv [Preprint]. 2022 Feb 23:2022.02.21.481223. doi: 10.1101/2022.02.21.481223. bioRxiv. 2022. PMID: 35233578 Free PMC article. Preprint.
Crosstalk between CRISPR-Cas9 and the human transcriptome.
Smargon AA, Madrigal AA, Yee BA, Dong KD, Mueller JR, Yeo GW. Smargon AA, et al. Nat Commun. 2022 Mar 2;13(1):1125. doi: 10.1038/s41467-022-28719-5. Nat Commun. 2022. PMID: 35236841 Free PMC article.
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.
Xiang JS, Mueller JR, Luo EC, Yee BA, Schafer D, Schmok JC, Tan FE, Rothamel K, McVicar RN, Kwong EM, Croker BA, Jones KL, Her HL, Chen CY, Vu AQ, Jin W, Park SS, Le P, Brannan KW, Kofman ER, Li Y, Tankka AT, Dong KD, Song Y, Clark AE, Carlin AF, Van Nostrand EL, Leibel SL, Yeo GW. Xiang JS, et al. Res Sq [Preprint]. 2022 Mar 17:rs.3.rs-1394331. doi: 10.21203/rs.3.rs-1394331/v1. Res Sq. 2022. PMID: 35313591 Free PMC article. Preprint.
A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer.
Antal CE, Oh TG, Aigner S, Luo EC, Yee BA, Campos T, Tiriac H, Rothamel KL, Cheng Z, Jiao H, Wang A, Hah N, Lenkiewicz E, Lumibao JC, Truitt ML, Estepa G, Banayo E, Bashi S, Esparza E, Munoz RM, Diedrich JK, Sodir NM, Mueller JR, Fraser CR, Borazanci E, Propper D, Von Hoff DD, Liddle C, Yu RT, Atkins AR, Han H, Lowy AM, Barrett MT, Engle DD, Evan GI, Yeo GW, Downes M, Evans RM. Antal CE, et al. Nat Commun. 2023 Sep 6;14(1):5195. doi: 10.1038/s41467-023-40798-6. Nat Commun. 2023. PMID: 37673892 Free PMC article.
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.
Medina-Munoz HC, Kofman E, Jagannatha P, Boyle EA, Yu T, Jones KL, Mueller JR, Lykins GD, Doudna AT, Park SS, Blue SM, Ranzau BL, Kohli RM, Komor AC, Yeo GW. Medina-Munoz HC, et al. bioRxiv [Preprint]. 2023 Sep 25:2023.09.25.558915. doi: 10.1101/2023.09.25.558915. bioRxiv. 2023. PMID: 37808757 Free PMC article. Updated. Preprint.
2,667 results