Mukherjee S - Search Results

1

Modeling cancer progression via pathway dependencies.

Edelman EJ, Guinney J, Chi JT, Febbo PG, Mukherjee S. Edelman EJ, et al. Among authors: mukherjee s. PLoS Comput Biol. 2008 Feb;4(2):e28. doi: 10.1371/journal.pcbi.0040028. PLoS Comput Biol. 2008. PMID: 18282083 Free PMC article.

2

Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.

Edelman E, Porrello A, Guinney J, Balakumaran B, Bild A, Febbo PG, Mukherjee S. Edelman E, et al. Among authors: mukherjee s. Bioinformatics. 2006 Jul 15;22(14):e108-16. doi: 10.1093/bioinformatics/btl231. Bioinformatics. 2006. PMID: 16873460

3

Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers.

Chi JT, Rodriguez EH, Wang Z, Nuyten DS, Mukherjee S, van de Rijn M, van de Vijver MJ, Hastie T, Brown PO. Chi JT, et al. Among authors: mukherjee s. PLoS Genet. 2007 Sep;3(9):1770-84. doi: 10.1371/journal.pgen.0030164. PLoS Genet. 2007. PMID: 17907811 Free PMC article.

4

A genomic approach to colon cancer risk stratification yields biologic insights into therapeutic opportunities.

Garman KS, Acharya CR, Edelman E, Grade M, Gaedcke J, Sud S, Barry W, Diehl AM, Provenzale D, Ginsburg GS, Ghadimi BM, Ried T, Nevins JR, Mukherjee S, Hsu D, Potti A. Garman KS, et al. Among authors: mukherjee s. Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19432-7. doi: 10.1073/pnas.0806674105. Epub 2008 Dec 2. Proc Natl Acad Sci U S A. 2008. PMID: 19050079 Free PMC article. Retracted.

5

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: mukherjee s. Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Genome Res. 2012. PMID: 21940837 Free PMC article.

6

Likelihood ratio statistics for gene set enrichment in Alzheimer's disease pathways.

Bryan J, Mandan A, Kamat G, Gottschalk WK, Badea A, Adams KJ, Thompson JW, Colton CA, Mukherjee S, Lutz MW; Alzheimer's Disease Neuroimaging Initiative. Bryan J, et al. Among authors: mukherjee s. Alzheimers Dement. 2021 Apr;17(4):561-573. doi: 10.1002/alz.12223. Epub 2021 Jan 21. Alzheimers Dement. 2021. PMID: 33480182 Free PMC article.

7

Label propagation defines signaling networks associated with recurrently mutated cancer genes.

Cakir M, Mukherjee S, Wood KC. Cakir M, et al. Among authors: mukherjee s. Sci Rep. 2019 Jun 28;9(1):9401. doi: 10.1038/s41598-019-45603-3. Sci Rep. 2019. PMID: 31253832 Free PMC article.

8

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

Bennett BD, Xiong Q, Mukherjee S, Furey TS. Bennett BD, et al. Among authors: mukherjee s. PLoS One. 2012;7(9):e44635. doi: 10.1371/journal.pone.0044635. Epub 2012 Sep 13. PLoS One. 2012. PMID: 23028573 Free PMC article.

9

Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer.

Acharya CR, Hsu DS, Anders CK, Anguiano A, Salter KH, Walters KS, Redman RC, Tuchman SA, Moylan CA, Mukherjee S, Barry WT, Dressman HK, Ginsburg GS, Marcom KP, Garman KS, Lyman GH, Nevins JR, Potti A. Acharya CR, et al. Among authors: mukherjee s. JAMA. 2008 Apr 2;299(13):1574-87. doi: 10.1001/jama.299.13.1574. JAMA. 2008. PMID: 18387932 Retracted.

10

Retraction for Garman et al: A genomic approach to colon cancer risk stratification yields biologic insights into therapeutic opportunities.

Garman KS, Acharya CR, Edelman E, Grade M, Gaedcke J, Sud S, Barry W, Diehl AM, Provenzale D, Ginsburg GS, Ghadimi BM, Ried T, Nevins JR, Mukherjee S, Hsu D, Potti A. Garman KS, et al. Among authors: mukherjee s. Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17569. doi: 10.1073/pnas.1115170108. Epub 2011 Oct 3. Proc Natl Acad Sci U S A. 2011. PMID: 21969600 Free PMC article. No abstract available.

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