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Crystal structure of squid rhodopsin.
Murakami M, Kouyama T. Murakami M, et al. Nature. 2008 May 15;453(7193):363-7. doi: 10.1038/nature06925. Nature. 2008. PMID: 18480818
Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States.
Chan SK, Kawaguchi H, Kubo H, Murakami M, Ihara K, Maki K, Kouyama T. Chan SK, et al. Among authors: murakami m. Biochemistry. 2016 Jul 26;55(29):4092-104. doi: 10.1021/acs.biochem.6b00277. Epub 2016 Jul 13. Biochemistry. 2016. PMID: 27352034
Crystal structures of the L1, L2, N, and O states of pharaonis halorhodopsin.
Kouyama T, Kawaguchi H, Nakanishi T, Kubo H, Murakami M. Kouyama T, et al. Among authors: murakami m. Biophys J. 2015 Jun 2;108(11):2680-90. doi: 10.1016/j.bpj.2015.04.027. Biophys J. 2015. PMID: 26039169 Free PMC article.
Crystallographic Study of the LUMI Intermediate of Squid Rhodopsin.
Murakami M, Kouyama T. Murakami M, et al. PLoS One. 2015 May 29;10(5):e0126970. doi: 10.1371/journal.pone.0126970. eCollection 2015. PLoS One. 2015. PMID: 26024518 Free PMC article.
Structure of archaerhodopsin-2 at 1.8 Å resolution.
Kouyama T, Fujii R, Kanada S, Nakanishi T, Chan SK, Murakami M. Kouyama T, et al. Among authors: murakami m. Acta Crystallogr D Biol Crystallogr. 2014 Oct;70(Pt 10):2692-701. doi: 10.1107/S1399004714017313. Epub 2014 Sep 27. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 25286853 Free PMC article.
Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis.
Chan SK, Kitajima-Ihara T, Fujii R, Gotoh T, Murakami M, Ihara K, Kouyama T. Chan SK, et al. Among authors: murakami m. PLoS One. 2014 Sep 30;9(9):e108362. doi: 10.1371/journal.pone.0108362. eCollection 2014. PLoS One. 2014. PMID: 25268964 Free PMC article.
Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans.
Zhang J, Mizuno K, Murata Y, Koide H, Murakami M, Ihara K, Kouyama T. Zhang J, et al. Among authors: murakami m. Proteins. 2013 Sep;81(9):1585-92. doi: 10.1002/prot.24316. Epub 2013 Jun 20. Proteins. 2013. PMID: 23625688
Large deformation of helix F during the photoreaction cycle of Pharaonis halorhodopsin in complex with azide.
Nakanishi T, Kanada S, Murakami M, Ihara K, Kouyama T. Nakanishi T, et al. Among authors: murakami m. Biophys J. 2013 Jan 22;104(2):377-85. doi: 10.1016/j.bpj.2012.12.018. Biophys J. 2013. PMID: 23442859 Free PMC article.
Crystal structure of the O intermediate of the Leu93→Ala mutant of bacteriorhodopsin.
Zhang J, Yamazaki Y, Hikake M, Murakami M, Ihara K, Kouyama T. Zhang J, et al. Among authors: murakami m. Proteins. 2012 Oct;80(10):2384-96. doi: 10.1002/prot.24124. Epub 2012 Jun 30. Proteins. 2012. PMID: 22641602
Crystallographic analysis of the primary photochemical reaction of squid rhodopsin.
Murakami M, Kouyama T. Murakami M, et al. J Mol Biol. 2011 Oct 28;413(3):615-27. doi: 10.1016/j.jmb.2011.08.044. Epub 2011 Aug 31. J Mol Biol. 2011. PMID: 21906602
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