Muse SV - Search Results

1

Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability.

Mannino F, Wisotsky S, Kosakovsky Pond SL, Muse SV. Mannino F, et al. Among authors: muse sv. PLoS One. 2020 Mar 2;15(3):e0229493. doi: 10.1371/journal.pone.0229493. eCollection 2020. PLoS One. 2020. PMID: 32119689 Free PMC article.

2

Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril.

Wisotsky SR, Kosakovsky Pond SL, Shank SD, Muse SV. Wisotsky SR, et al. Among authors: muse sv. Mol Biol Evol. 2020 Aug 1;37(8):2430-2439. doi: 10.1093/molbev/msaa037. Mol Biol Evol. 2020. PMID: 32068869 Free PMC article.

3

HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.

Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV. Kosakovsky Pond SL, et al. Among authors: muse sv. Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197. Mol Biol Evol. 2020. PMID: 31504749 Free PMC article.

4

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes.

Weaver S, Shank SD, Spielman SJ, Li M, Muse SV, Kosakovsky Pond SL. Weaver S, et al. Among authors: muse sv. Mol Biol Evol. 2018 Mar 1;35(3):773-777. doi: 10.1093/molbev/msx335. Mol Biol Evol. 2018. PMID: 29301006 Free PMC article.

5

Training the next generation of quantitative biologists in the era of big data.

Pattin KA, Greene AC, Altman RB, Cohen KB, Wethington E, Görg C, Hunter LE, Muse SV, Radivojac P, Moore JH. Pattin KA, et al. Among authors: muse sv. Pac Symp Biocomput. 2015:488-92. Pac Symp Biocomput. 2015. PMID: 25592609 Free article.

6

Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata.

Katz LA, DeBerardinis J, Hall MS, Kovner AM, Dunthorn M, Muse SV. Katz LA, et al. Among authors: muse sv. J Mol Evol. 2011 Dec;73(5-6):266-72. doi: 10.1007/s00239-011-9468-x. Epub 2012 Jan 19. J Mol Evol. 2011. PMID: 22258433 Free PMC article.

7

CodonTest: modeling amino acid substitution preferences in coding sequences.

Delport W, Scheffler K, Botha G, Gravenor MB, Muse SV, Kosakovsky Pond SL. Delport W, et al. Among authors: muse sv. PLoS Comput Biol. 2010 Aug 19;6(8):e1000885. doi: 10.1371/journal.pcbi.1000885. PLoS Comput Biol. 2010. PMID: 20808876 Free PMC article.

8

Correcting the bias of empirical frequency parameter estimators in codon models.

Kosakovsky Pond S, Delport W, Muse SV, Scheffler K. Kosakovsky Pond S, et al. Among authors: muse sv. PLoS One. 2010 Jul 30;5(7):e11230. doi: 10.1371/journal.pone.0011230. PLoS One. 2010. PMID: 20689581 Free PMC article.

9

Benchmarking multi-rate codon models.

Delport W, Scheffler K, Gravenor MB, Muse SV, Kosakovsky Pond S. Delport W, et al. Among authors: muse sv. PLoS One. 2010 Jul 21;5(7):e11587. doi: 10.1371/journal.pone.0011587. PLoS One. 2010. PMID: 20657773 Free PMC article.

10

Genomic analysis of closely related astroviruses.

Strain E, Kelley LA, Schultz-Cherry S, Muse SV, Koci MD. Strain E, et al. Among authors: muse sv. J Virol. 2008 May;82(10):5099-103. doi: 10.1128/JVI.01993-07. Epub 2008 Mar 5. J Virol. 2008. PMID: 18321976 Free PMC article.

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