Nagarajan N - Search Results

1

In vitro and in vivo correlates of physiological and neoplastic human Fallopian tube stem cells.

Yamamoto Y, Ning G, Howitt BE, Mehra K, Wu L, Wang X, Hong Y, Kern F, Wei TS, Zhang T, Nagarajan N, Basuli D, Torti S, Brewer M, Choolani M, McKeon F, Crum CP, Xian W. Yamamoto Y, et al. Among authors: nagarajan n. J Pathol. 2016 Mar;238(4):519-530. doi: 10.1002/path.4649. Epub 2016 Jan 9. J Pathol. 2016. PMID: 26415052 Free PMC article.

2

Mutational spectrum of Barrett's stem cells suggests paths to initiation of a precancerous lesion.

Yamamoto Y, Wang X, Bertrand D, Kern F, Zhang T, Duleba M, Srivastava S, Khor CC, Hu Y, Wilson LH, Blaszyk H, Rolshud D, Teh M, Liu J, Howitt BE, Vincent M, Crum CP, Nagarajan N, Ho KY, McKeon F, Xian W. Yamamoto Y, et al. Among authors: nagarajan n. Nat Commun. 2016 Jan 19;7:10380. doi: 10.1038/ncomms10380. Nat Commun. 2016. PMID: 26783136 Free PMC article.

3

Cloning and variation of ground state intestinal stem cells.

Wang X, Yamamoto Y, Wilson LH, Zhang T, Howitt BE, Farrow MA, Kern F, Ning G, Hong Y, Khor CC, Chevalier B, Bertrand D, Wu L, Nagarajan N, Sylvester FA, Hyams JS, Devers T, Bronson R, Lacy DB, Ho KY, Crum CP, McKeon F, Xian W. Wang X, et al. Among authors: nagarajan n. Nature. 2015 Jun 11;522(7555):173-8. doi: 10.1038/nature14484. Epub 2015 Jun 3. Nature. 2015. PMID: 26040716 Free PMC article.

4

Measurement of fetal fraction in cell-free DNA from maternal plasma using a panel of insertion/deletion polymorphisms.

Barrett AN, Xiong L, Tan TZ, Advani HV, Hua R, Laureano-Asibal C, Soong R, Biswas A, Nagarajan N, Choolani M. Barrett AN, et al. Among authors: nagarajan n. PLoS One. 2017 Oct 30;12(10):e0186771. doi: 10.1371/journal.pone.0186771. eCollection 2017. PLoS One. 2017. PMID: 29084245 Free PMC article.

5

Systems consequences of amplicon formation in human breast cancer.

Inaki K, Menghi F, Woo XY, Wagner JP, Jacques PÉ, Lee YF, Shreckengast PT, Soon WW, Malhotra A, Teo AS, Hillmer AM, Khng AJ, Ruan X, Ong SH, Bertrand D, Nagarajan N, Karuturi RK, Miranda AH, Liu ET. Inaki K, et al. Among authors: nagarajan n. Genome Res. 2014 Oct;24(10):1559-71. doi: 10.1101/gr.164871.113. Epub 2014 Sep 3. Genome Res. 2014. PMID: 25186909 Free PMC article.

6

Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles.

Bertrand D, Chng KR, Sherbaf FG, Kiesel A, Chia BK, Sia YY, Huang SK, Hoon DS, Liu ET, Hillmer A, Nagarajan N. Bertrand D, et al. Among authors: nagarajan n. Nucleic Acids Res. 2015 Apr 20;43(7):e44. doi: 10.1093/nar/gku1393. Epub 2015 Jan 8. Nucleic Acids Res. 2015. PMID: 25572314 Free PMC article.

7

Predicting Cancer Drug Response using a Recommender System.

Suphavilai C, Bertrand D, Nagarajan N. Suphavilai C, et al. Among authors: nagarajan n. Bioinformatics. 2018 Nov 15;34(22):3907-3914. doi: 10.1093/bioinformatics/bty452. Bioinformatics. 2018. PMID: 29868820

8

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees.

Gao S, Bertrand D, Chia BK, Nagarajan N. Gao S, et al. Among authors: nagarajan n. Genome Biol. 2016 May 11;17:102. doi: 10.1186/s13059-016-0951-y. Genome Biol. 2016. PMID: 27169502 Free PMC article.

9

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets.

Wilm A, Aw PP, Bertrand D, Yeo GH, Ong SH, Wong CH, Khor CC, Petric R, Hibberd ML, Nagarajan N. Wilm A, et al. Among authors: nagarajan n. Nucleic Acids Res. 2012 Dec;40(22):11189-201. doi: 10.1093/nar/gks918. Epub 2012 Oct 12. Nucleic Acids Res. 2012. PMID: 23066108 Free PMC article.

10

Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes.

Zang ZJ, Cutcutache I, Poon SL, Zhang SL, McPherson JR, Tao J, Rajasegaran V, Heng HL, Deng N, Gan A, Lim KH, Ong CK, Huang D, Chin SY, Tan IB, Ng CC, Yu W, Wu Y, Lee M, Wu J, Poh D, Wan WK, Rha SY, So J, Salto-Tellez M, Yeoh KG, Wong WK, Zhu YJ, Futreal PA, Pang B, Ruan Y, Hillmer AM, Bertrand D, Nagarajan N, Rozen S, Teh BT, Tan P. Zang ZJ, et al. Among authors: nagarajan n. Nat Genet. 2012 May;44(5):570-4. doi: 10.1038/ng.2246. Nat Genet. 2012. PMID: 22484628

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