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Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences.
Nagy LG, Petkovits T, Kovács GM, Voigt K, Vágvölgyi C, Papp T. Nagy LG, et al. New Phytol. 2011 Aug;191(3):789-94. doi: 10.1111/j.1469-8137.2011.03707.x. Epub 2011 Mar 31. New Phytol. 2011. PMID: 21453289
Data partitions, Bayesian analysis and phylogeny of the zygomycetous fungal family Mortierellaceae, inferred from nuclear ribosomal DNA sequences.
Petkovits T, Nagy LG, Hoffmann K, Wagner L, Nyilasi I, Griebel T, Schnabelrauch D, Vogel H, Voigt K, Vágvölgyi C, Papp T. Petkovits T, et al. PLoS One. 2011;6(11):e27507. doi: 10.1371/journal.pone.0027507. Epub 2011 Nov 10. PLoS One. 2011. PMID: 22102902 Free PMC article.
No indication of strict host associations in a widespread mycoparasite: grapevine powdery mildew (Erysiphe necator) is attacked by phylogenetically distant Ampelomyces strains in the field.
Pintye A, Bereczky Z, Kovács GM, Nagy LG, Xu X, Legler SE, Váczy Z, Váczy KZ, Caffi T, Rossi V, Kiss L. Pintye A, et al. Phytopathology. 2012 Jul;102(7):707-16. doi: 10.1094/PHYTO-10-11-0270. Phytopathology. 2012. PMID: 22512466
Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi.
Nagy LG, Kocsubé S, Csanádi Z, Kovács GM, Petkovits T, Vágvölgyi C, Papp T. Nagy LG, et al. PLoS One. 2012;7(11):e49794. doi: 10.1371/journal.pone.0049794. Epub 2012 Nov 19. PLoS One. 2012. PMID: 23185439 Free PMC article.
Iteratively refined guide trees help improving alignment and phylogenetic inference in the mushroom family Bolbitiaceae.
Tóth A, Hausknecht A, Krisai-Greilhuber I, Papp T, Vágvölgyi C, Nagy LG. Tóth A, et al. PLoS One. 2013;8(2):e56143. doi: 10.1371/journal.pone.0056143. Epub 2013 Feb 13. PLoS One. 2013. PMID: 23418526 Free PMC article.
Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts.
Nagy LG, Ohm RA, Kovács GM, Floudas D, Riley R, Gácser A, Sipiczki M, Davis JM, Doty SL, de Hoog GS, Lang BF, Spatafora JW, Martin FM, Grigoriev IV, Hibbett DS. Nagy LG, et al. Nat Commun. 2014 Jul 18;5:4471. doi: 10.1038/ncomms5471. Nat Commun. 2014. PMID: 25034666
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS. Floudas D, et al. Fungal Genet Biol. 2015 Mar;76:78-92. doi: 10.1016/j.fgb.2015.02.002. Epub 2015 Feb 12. Fungal Genet Biol. 2015. PMID: 25683379 Free PMC article.
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