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Genomics and evolution of heritable bacterial symbionts.
Moran NA, McCutcheon JP, Nakabachi A. Moran NA, et al. Annu Rev Genet. 2008;42:165-90. doi: 10.1146/annurev.genet.41.110306.130119. Annu Rev Genet. 2008. PMID: 18983256 Review.
Recently, molecular and experimental approaches have yielded an immensely richer understanding of their diverse biological roles, resulting in a burgeoning research literature. ...Among the most far-reaching impacts of widespread heritable symbiosis is that it may promote …
Recently, molecular and experimental approaches have yielded an immensely richer understanding of their diverse biological roles, resulting …
The 160-kilobase genome of the bacterial endosymbiont Carsonella.
Nakabachi A, Yamashita A, Toh H, Ishikawa H, Dunbar HE, Moran NA, Hattori M. Nakabachi A, et al. Science. 2006 Oct 13;314(5797):267. doi: 10.1126/science.1134196. Science. 2006. PMID: 17038615
Here, we report the complete genome sequence of the psyllid symbiont Carsonella ruddii, which consists of a circular chromosome of 159,662 base pairs, averaging 16.5% GC content. ...The genome has a high coding density (97%) with many overlapping genes and reduced g …
Here, we report the complete genome sequence of the psyllid symbiont Carsonella ruddii, which consists of a circular chromosome of 15 …
Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects.
Sloan DB, Nakabachi A, Richards S, Qu J, Murali SC, Gibbs RA, Moran NA. Sloan DB, et al. Among authors: nakabachi a. Mol Biol Evol. 2014 Apr;31(4):857-71. doi: 10.1093/molbev/msu004. Epub 2014 Jan 6. Mol Biol Evol. 2014. PMID: 24398322 Free PMC article.
Immunity and other defenses in pea aphids, Acyrthosiphon pisum.
Gerardo NM, Altincicek B, Anselme C, Atamian H, Barribeau SM, de Vos M, Duncan EJ, Evans JD, Gabaldón T, Ghanim M, Heddi A, Kaloshian I, Latorre A, Moya A, Nakabachi A, Parker BJ, Pérez-Brocal V, Pignatelli M, Rahbé Y, Ramsey JS, Spragg CJ, Tamames J, Tamarit D, Tamborindeguy C, Vincent-Monegat C, Vilcinskas A. Gerardo NM, et al. Genome Biol. 2010;11(2):R21. doi: 10.1186/gb-2010-11-2-r21. Epub 2010 Feb 23. Genome Biol. 2010. PMID: 20178569 Free PMC article.
Using the recently sequenced genome of the pea aphid (Acyrthosiphon pisum), we conducted the first extensive annotation of the immune and stress gene repertoire of a hemipterous insect, which is phylogenetically distantly related to previously characterized insects models. …
Using the recently sequenced genome of the pea aphid (Acyrthosiphon pisum), we conducted the first extensive annotation of the immune and st …
Bacterial genes in the aphid genome: absence of functional gene transfer from Buchnera to its host.
Nikoh N, McCutcheon JP, Kudo T, Miyagishima SY, Moran NA, Nakabachi A. Nikoh N, et al. PLoS Genet. 2010 Feb 26;6(2):e1000827. doi: 10.1371/journal.pgen.1000827. PLoS Genet. 2010. PMID: 20195500 Free PMC article.
The newly sequenced genome of the pea aphid, Acyrthosiphon pisum, presents the first opportunity for a complete inventory of genes transferred from bacteria to the host genome in the context of an ancient obligate symbiosis. ...Our results excluded the hypothesis that geno …
The newly sequenced genome of the pea aphid, Acyrthosiphon pisum, presents the first opportunity for a complete inventory of genes tr …
Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector.
Nakabachi A, Nikoh N, Oshima K, Inoue H, Ohkuma M, Hongoh Y, Miyagishima SY, Hattori M, Fukatsu T. Nakabachi A, et al. PLoS One. 2013 Dec 4;8(12):e82612. doi: 10.1371/journal.pone.0082612. eCollection 2013. PLoS One. 2013. PMID: 24349319 Free PMC article.
Expression of host S-adenosylmethionine decarboxylase gene and polyamine composition in aphid bacteriocytes.
Nakabachi A, Ishikawa H. Nakabachi A, et al. Insect Biochem Mol Biol. 2001 Mar 15;31(4-5):491-6. doi: 10.1016/s0965-1748(00)00156-9. Insect Biochem Mol Biol. 2001. PMID: 11222959
SAMDC is a key enzyme to synthesize polyamines that are known to be involved in a large array of biological events including protein synthesis, DNA stabilization, DNA replication, and cell proliferation. ...This is the first report of polyamine assessment in a
SAMDC is a key enzyme to synthesize polyamines that are known to be involved in a large array of biological events including p …
Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera.
Nakabachi A, Shigenobu S, Sakazume N, Shiraki T, Hayashizaki Y, Carninci P, Ishikawa H, Kudo T, Fukatsu T. Nakabachi A, et al. Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5477-82. doi: 10.1073/pnas.0409034102. Epub 2005 Mar 30. Proc Natl Acad Sci U S A. 2005. PMID: 15800043 Free PMC article.
A number of genes were highly expressed specifically in the bacteriocyte, including (i) genes for amino acid metabolism, including those for biosynthesis of amino acids that Buchnera cannot produce, and those for utilization of amino acids that Buchnera can synthesize; (ii
A number of genes were highly expressed specifically in the bacteriocyte, including (i) genes for amino acid metabolism, including th
A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum.
Shigenobu S, Richards S, Cree AG, Morioka M, Fukatsu T, Kudo T, Miyagishima S, Gibbs RA, Stern DL, Nakabachi A. Shigenobu S, et al. Insect Mol Biol. 2010 Mar;19 Suppl 2(0 2):23-31. doi: 10.1111/j.1365-2583.2009.00946.x. Insect Mol Biol. 2010. PMID: 20482637 Free PMC article.
We report the creation of a collection of 50 599 full-length cDNA clones from the pea aphid, Acyrthosiphon pisum. Sequencing from 5' and 3' ends of the clones generated 97 828 high-quality expressed sequence tags, representing approximately 9000 genes. ...This full-length …
We report the creation of a collection of 50 599 full-length cDNA clones from the pea aphid, Acyrthosiphon pisum. Sequencing from 5' …
A genomic analysis of transcytosis in the pea aphid, Acyrthosiphon pisum, a mechanism involved in virus transmission.
Tamborindeguy C, Monsion B, Brault V, Hunnicutt L, Ju HJ, Nakabachi A, Van Fleet E. Tamborindeguy C, et al. Insect Mol Biol. 2010 Mar;19 Suppl 2:259-72. doi: 10.1111/j.1365-2583.2009.00956.x. Insect Mol Biol. 2010. PMID: 20482656
Assemblage of this annotated dataset provides a useful basis to improve our understanding of the molecules and mechanisms involved in virus transmission by A. pisum and other aphid species....
Assemblage of this annotated dataset provides a useful basis to improve our understanding of the molecules and mechanisms involved in …
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