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Logical modelling of regulatory networks with GINsim 2.3.
Naldi A, Berenguier D, Fauré A, Lopez F, Thieffry D, Chaouiya C. Naldi A, et al. Biosystems. 2009 Aug;97(2):134-9. doi: 10.1016/j.biosystems.2009.04.008. Epub 2009 May 6. Biosystems. 2009. PMID: 19426782
Modular logical modelling of the budding yeast cell cycle.
Fauré A, Naldi A, Lopez F, Chaouiya C, Ciliberto A, Thieffry D. Fauré A, et al. Among authors: naldi a. Mol Biosyst. 2009 Dec;5(12):1787-96. doi: 10.1039/B910101m. Epub 2009 Jul 31. Mol Biosyst. 2009. PMID: 19763337
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Naldi A, Monteiro PT, Müssel C; Consortium for Logical Models and Tools; Kestler HA, Thieffry D, Xenarios I, Saez-Rodriguez J, Helikar T, Chaouiya C. Naldi A, et al. Bioinformatics. 2015 Apr 1;31(7):1154-9. doi: 10.1093/bioinformatics/btv013. Epub 2015 Jan 25. Bioinformatics. 2015. PMID: 25619997
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
Chaouiya C, Bérenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Dräger A, Büchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T. Chaouiya C, et al. Among authors: naldi a. BMC Syst Biol. 2013 Dec 10;7:135. doi: 10.1186/1752-0509-7-135. BMC Syst Biol. 2013. PMID: 24321545 Free PMC article.
104 results