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463 results
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A tree of cellular life inferred from a genomic census of molecular functions.
Kim KM, Nasir A, Hwang K, Caetano-Anollés G. Kim KM, et al. Among authors: nasir a. J Mol Evol. 2014 Dec;79(5-6):240-62. doi: 10.1007/s00239-014-9637-9. Epub 2014 Aug 17. J Mol Evol. 2014. PMID: 25128982
Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya.
Nasir A, Kim KM, Caetano-Anolles G. Nasir A, et al. BMC Evol Biol. 2012 Aug 24;12:156. doi: 10.1186/1471-2148-12-156. BMC Evol Biol. 2012. PMID: 22920653 Free PMC article.
The importance of using realistic evolutionary models for retrodicting proteomes.
Kim KM, Nasir A, Caetano-Anollés G. Kim KM, et al. Among authors: nasir a. Biochimie. 2014 Apr;99:129-37. doi: 10.1016/j.biochi.2013.11.019. Epub 2013 Dec 4. Biochimie. 2014. PMID: 24316279
Global patterns of protein domain gain and loss in superkingdoms.
Nasir A, Kim KM, Caetano-Anollés G. Nasir A, et al. PLoS Comput Biol. 2014 Jan 30;10(1):e1003452. doi: 10.1371/journal.pcbi.1003452. eCollection 2014 Jan. PLoS Comput Biol. 2014. PMID: 24499935 Free PMC article.
The distribution and impact of viral lineages in domains of life.
Nasir A, Forterre P, Kim KM, Caetano-Anollés G. Nasir A, et al. Front Microbiol. 2014 Apr 30;5:194. doi: 10.3389/fmicb.2014.00194. eCollection 2014. Front Microbiol. 2014. PMID: 24817866 Free PMC article. No abstract available.
Archaea: the first domain of diversified life.
Caetano-Anollés G, Nasir A, Zhou K, Caetano-Anollés D, Mittenthal JE, Sun FJ, Kim KM. Caetano-Anollés G, et al. Among authors: nasir a. Archaea. 2014 Jun 2;2014:590214. doi: 10.1155/2014/590214. eCollection 2014. Archaea. 2014. PMID: 24987307 Free PMC article. Review.
A phylogenomic census of molecular functions identifies modern thermophilic archaea as the most ancient form of cellular life.
Nasir A, Kim KM, Caetano-Anollés G. Nasir A, et al. Archaea. 2014 Aug 31;2014:706468. doi: 10.1155/2014/706468. eCollection 2014. Archaea. 2014. PMID: 25249790 Free PMC article.
Complete genome of Kangiella geojedonensis KCTC 23420(T), putative evidence for recent genome reduction in marine environments.
Choe H, Kim S, Oh J, Nasir A, Kim BK, Kim KM. Choe H, et al. Among authors: nasir a. Mar Genomics. 2015 Dec;24 Pt 3:215-7. doi: 10.1016/j.margen.2015.05.015. Epub 2015 Jun 1. Mar Genomics. 2015. PMID: 26044616
Lokiarchaeota: eukaryote-like missing links from microbial dark matter?
Nasir A, Kim KM, Caetano-Anollés G. Nasir A, et al. Trends Microbiol. 2015 Aug;23(8):448-50. doi: 10.1016/j.tim.2015.06.001. Epub 2015 Jun 22. Trends Microbiol. 2015. PMID: 26112912
Complete genome of the marine bacterium Wenzhouxiangella marina KCTC 42284(T).
Lee SH, Choe H, Kim BK, Nasir A, Kim KM. Lee SH, et al. Among authors: nasir a. Mar Genomics. 2015 Dec;24 Pt 3:277-80. doi: 10.1016/j.margen.2015.09.006. Epub 2015 Sep 26. Mar Genomics. 2015. PMID: 26411640
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