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Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition.
Oatley M, Bölükbası ÖV, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. Oatley M, et al. Among authors: Natarajan KN. Nat Commun. 2020 Jan 29;11(1):586. doi: 10.1038/s41467-019-14171-5. Nat Commun. 2020. PMID: 31996681 Free PMC article.
Computational assignment of cell-cycle stage from single-cell transcriptome data.
Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F. Scialdone A, et al. Among authors: Natarajan KN. Methods. 2015 Sep 1;85:54-61. doi: 10.1016/j.ymeth.2015.06.021. Epub 2015 Jul 2. Methods. 2015. PMID: 26142758
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation.
Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Among authors: Natarajan KN. Cell Stem Cell. 2015 Oct 1;17(4):471-85. doi: 10.1016/j.stem.2015.09.011. Cell Stem Cell. 2015. PMID: 26431182 Free PMC article.
Power analysis of single-cell RNA-sequencing experiments.
Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. Svensson V, et al. Among authors: Natarajan KN. Nat Methods. 2017 Apr;14(4):381-387. doi: 10.1038/nmeth.4220. Epub 2017 Mar 6. Nat Methods. 2017. PMID: 28263961 Free PMC article.
SC3: consensus clustering of single-cell RNA-seq data.
Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M. Kiselev VY, et al. Among authors: Natarajan KN. Nat Methods. 2017 May;14(5):483-486. doi: 10.1038/nmeth.4236. Epub 2017 Mar 27. Nat Methods. 2017. PMID: 28346451 Free PMC article.
Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions.
Tuck AC, Natarajan KN, Rice GM, Borawski J, Mohn F, Rankova A, Flemr M, Wenger A, Nutiu R, Teichmann S, Bühler M. Tuck AC, et al. Among authors: Natarajan KN. Life Sci Alliance. 2018 Jul 31;1(4):e201800124. doi: 10.26508/lsa.201800124. eCollection 2018 Aug. Life Sci Alliance. 2018. PMID: 30456373 Free PMC article.
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