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PLINK: a tool set for whole-genome association and population-based linkage analyses.
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC. Purcell S, et al. Am J Hum Genet. 2007 Sep;81(3):559-75. doi: 10.1086/519795. Epub 2007 Jul 25. Am J Hum Genet. 2007. PMID: 17701901 Free PMC article.
Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.
Plenge RM, Cotsapas C, Davies L, Price AL, de Bakker PI, Maller J, Pe'er I, Burtt NP, Blumenstiel B, DeFelice M, Parkin M, Barry R, Winslow W, Healy C, Graham RR, Neale BM, Izmailova E, Roubenoff R, Parker AN, Glass R, Karlson EW, Maher N, Hafler DA, Lee DM, Seldin MF, Remmers EF, Lee AT, Padyukov L, Alfredsson L, Coblyn J, Weinblatt ME, Gabriel SB, Purcell S, Klareskog L, Gregersen PK, Shadick NA, Daly MJ, Altshuler D. Plenge RM, et al. Nat Genet. 2007 Dec;39(12):1477-82. doi: 10.1038/ng.2007.27. Epub 2007 Nov 4. Nat Genet. 2007. PMID: 17982456 Free PMC article.
Common variants at CD40 and other loci confer risk of rheumatoid arthritis.
Raychaudhuri S, Remmers EF, Lee AT, Hackett R, Guiducci C, Burtt NP, Gianniny L, Korman BD, Padyukov L, Kurreeman FA, Chang M, Catanese JJ, Ding B, Wong S, van der Helm-van Mil AH, Neale BM, Coblyn J, Cui J, Tak PP, Wolbink GJ, Crusius JB, van der Horst-Bruinsma IE, Criswell LA, Amos CI, Seldin MF, Kastner DL, Ardlie KG, Alfredsson L, Costenbader KH, Altshuler D, Huizinga TW, Shadick NA, Weinblatt ME, de Vries N, Worthington J, Seielstad M, Toes RE, Karlson EW, Begovich AB, Klareskog L, Gregersen PK, Daly MJ, Plenge RM. Raychaudhuri S, et al. Nat Genet. 2008 Oct;40(10):1216-23. doi: 10.1038/ng.233. Epub 2008 Sep 14. Nat Genet. 2008. PMID: 18794853 Free PMC article.
Genome-wide association study of response to methylphenidate in 187 children with attention-deficit/hyperactivity disorder.
Mick E, Neale B, Middleton FA, McGough JJ, Faraone SV. Mick E, et al. Am J Med Genet B Neuropsychiatr Genet. 2008 Dec 5;147B(8):1412-8. doi: 10.1002/ajmg.b.30865. Am J Med Genet B Neuropsychiatr Genet. 2008. PMID: 18821564
Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.
Lasky-Su J, Neale BM, Franke B, Anney RJ, Zhou K, Maller JB, Vasquez AA, Chen W, Asherson P, Buitelaar J, Banaschewski T, Ebstein R, Gill M, Miranda A, Mulas F, Oades RD, Roeyers H, Rothenberger A, Sergeant J, Sonuga-Barke E, Steinhausen HC, Taylor E, Daly M, Laird N, Lange C, Faraone SV. Lasky-Su J, et al. Am J Med Genet B Neuropsychiatr Genet. 2008 Dec 5;147B(8):1345-54. doi: 10.1002/ajmg.b.30867. Am J Med Genet B Neuropsychiatr Genet. 2008. PMID: 18821565
Practical aspects of imputation-driven meta-analysis of genome-wide association studies.
de Bakker PI, Ferreira MA, Jia X, Neale BM, Raychaudhuri S, Voight BF. de Bakker PI, et al. Hum Mol Genet. 2008 Oct 15;17(R2):R122-8. doi: 10.1093/hmg/ddn288. Hum Mol Genet. 2008. PMID: 18852200 Free PMC article.
Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.
Lasky-Su J, Anney RJ, Neale BM, Franke B, Zhou K, Maller JB, Vasquez AA, Chen W, Asherson P, Buitelaar J, Banaschewski T, Ebstein R, Gill M, Miranda A, Mulas F, Oades RD, Roeyers H, Rothenberger A, Sergeant J, Sonuga-Barke E, Steinhausen HC, Taylor E, Daly M, Laird N, Lange C, Faraone SV. Lasky-Su J, et al. Am J Med Genet B Neuropsychiatr Genet. 2008 Dec 5;147B(8):1355-8. doi: 10.1002/ajmg.b.30869. Am J Med Genet B Neuropsychiatr Genet. 2008. PMID: 18937294 Free PMC article.
Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.
Lowe JK, Maller JB, Pe'er I, Neale BM, Salit J, Kenny EE, Shea JL, Burkhardt R, Smith JG, Ji W, Noel M, Foo JN, Blundell ML, Skilling V, Garcia L, Sullivan ML, Lee HE, Labek A, Ferdowsian H, Auerbach SB, Lifton RP, Newton-Cheh C, Breslow JL, Stoffel M, Daly MJ, Altshuler DM, Friedman JM. Lowe JK, et al. PLoS Genet. 2009 Feb;5(2):e1000365. doi: 10.1371/journal.pgen.1000365. Epub 2009 Feb 6. PLoS Genet. 2009. PMID: 19197348 Free PMC article.
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