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Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.
Parada AE, Needham DM, Fuhrman JA. Parada AE, et al. Among authors: needham dm. Environ Microbiol. 2016 May;18(5):1403-14. doi: 10.1111/1462-2920.13023. Epub 2015 Oct 14. Environ Microbiol. 2016. PMID: 26271760
Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes.
Sieradzki ET, Ignacio-Espinoza JC, Needham DM, Fichot EB, Fuhrman JA. Sieradzki ET, et al. Among authors: needham dm. Nat Commun. 2019 Mar 12;10(1):1169. doi: 10.1038/s41467-019-09106-z. Nat Commun. 2019. PMID: 30862830 Free PMC article.
Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria.
Gómez-Consarnau L, Needham DM, Weber PK, Fuhrman JA, Mayali X. Gómez-Consarnau L, et al. Among authors: needham dm. Front Microbiol. 2019 Jun 4;10:1204. doi: 10.3389/fmicb.2019.01204. eCollection 2019. Front Microbiol. 2019. PMID: 31214143 Free PMC article.
Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling.
Needham DM, Fichot EB, Wang E, Berdjeb L, Cram JA, Fichot CG, Fuhrman JA. Needham DM, et al. ISME J. 2018 Oct;12(10):2417-2432. doi: 10.1038/s41396-018-0169-y. Epub 2018 Jun 13. ISME J. 2018. PMID: 29899514 Free PMC article.
Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run.
Yeh YC, Needham DM, Sieradzki ET, Fuhrman JA. Yeh YC, et al. Among authors: needham dm. mSystems. 2018 Apr 3;3(3):e00023-18. doi: 10.1128/mSystems.00023-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29629423 Free PMC article.
Short-term dynamics and interactions of marine protist communities during the spring-summer transition.
Berdjeb L, Parada A, Needham DM, Fuhrman JA. Berdjeb L, et al. Among authors: needham dm. ISME J. 2018 Aug;12(8):1907-1917. doi: 10.1038/s41396-018-0097-x. Epub 2018 Mar 29. ISME J. 2018. PMID: 29599520 Free PMC article.
Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems.
Ahlgren NA, Chen Y, Needham DM, Parada AE, Sachdeva R, Trinh V, Chen T, Fuhrman JA. Ahlgren NA, et al. Among authors: needham dm. Environ Microbiol. 2017 Jun;19(6):2434-2452. doi: 10.1111/1462-2920.13768. Epub 2017 May 26. Environ Microbiol. 2017. PMID: 28418097
Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters.
Needham DM, Sachdeva R, Fuhrman JA. Needham DM, et al. ISME J. 2017 Jul;11(7):1614-1629. doi: 10.1038/ismej.2017.29. Epub 2017 Apr 11. ISME J. 2017. PMID: 28398348 Free PMC article.
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom.
Needham DM, Fuhrman JA. Needham DM, et al. Nat Microbiol. 2016 Feb 29;1:16005. doi: 10.1038/nmicrobiol.2016.5. Nat Microbiol. 2016. PMID: 27572439
Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.
Cram JA, Xia LC, Needham DM, Sachdeva R, Sun F, Fuhrman JA. Cram JA, et al. Among authors: needham dm. ISME J. 2015 Dec;9(12):2573-86. doi: 10.1038/ismej.2015.76. Epub 2015 May 19. ISME J. 2015. PMID: 25989373 Free PMC article.
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